miRNA display CGI


Results 1 - 20 of 226 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28267 3' -44.5 NC_005902.1 + 184860 0.76 0.969723
Target:  5'- aACCcUUUAACACCUAAGCUGUa--- -3'
miRNA:   3'- gUGGaAAAUUGUGGGUUCGAUAcuug -5'
28267 3' -44.5 NC_005902.1 + 184734 0.67 0.999996
Target:  5'- aCACCUUaggaauuaauccUAACACCUGAGCUAUa--- -3'
miRNA:   3'- -GUGGAAa-----------AUUGUGGGUUCGAUAcuug -5'
28267 3' -44.5 NC_005902.1 + 184372 0.68 0.999977
Target:  5'- aACCUUUUAACACCCGuuauaUAUaGAAa -3'
miRNA:   3'- gUGGAAAAUUGUGGGUucg--AUA-CUUg -5'
28267 3' -44.5 NC_005902.1 + 182934 0.77 0.962828
Target:  5'- ---aUUUUAACACCUAAGCUAuauaUGAACa -3'
miRNA:   3'- guggAAAAUUGUGGGUUCGAU----ACUUG- -5'
28267 3' -44.5 NC_005902.1 + 182558 0.8 0.891657
Target:  5'- cCACUcgaUUUUAACACCUAAGCUAuauacaaaUGAGCa -3'
miRNA:   3'- -GUGG---AAAAUUGUGGGUUCGAU--------ACUUG- -5'
28267 3' -44.5 NC_005902.1 + 180882 0.69 0.999943
Target:  5'- aACCcUUUAACAUCUAAGCaauaucacaaGUGAGCa -3'
miRNA:   3'- gUGGaAAAUUGUGGGUUCGa---------UACUUG- -5'
28267 3' -44.5 NC_005902.1 + 180612 0.78 0.941011
Target:  5'- uCGCUUuaauucUUUAACACCUAAGCUuauAUGAACa -3'
miRNA:   3'- -GUGGA------AAAUUGUGGGUUCGA---UACUUG- -5'
28267 3' -44.5 NC_005902.1 + 177588 0.69 0.999867
Target:  5'- aACCUUUUAACACCUAAaCUAUu--- -3'
miRNA:   3'- gUGGAAAAUUGUGGGUUcGAUAcuug -5'
28267 3' -44.5 NC_005902.1 + 174590 0.81 0.834474
Target:  5'- gACCgagUUAACACCUAAGCUAuauacgaaUGAGCa -3'
miRNA:   3'- gUGGaa-AAUUGUGGGUUCGAU--------ACUUG- -5'
28267 3' -44.5 NC_005902.1 + 174462 0.66 0.999998
Target:  5'- aAUCUUUUuACAUCUAAGCUAUauACu -3'
miRNA:   3'- gUGGAAAAuUGUGGGUUCGAUAcuUG- -5'
28267 3' -44.5 NC_005902.1 + 172813 0.77 0.954909
Target:  5'- uUACCcUUUAACACCUAAGCUAuauaUGAGu -3'
miRNA:   3'- -GUGGaAAAUUGUGGGUUCGAU----ACUUg -5'
28267 3' -44.5 NC_005902.1 + 172604 0.71 0.999271
Target:  5'- aACCcUUUAACACUUAAGCUAUauACu -3'
miRNA:   3'- gUGGaAAAUUGUGGGUUCGAUAcuUG- -5'
28267 3' -44.5 NC_005902.1 + 170846 0.66 0.999999
Target:  5'- aUACCcUUUAACAUgUAAGCUAUauACa -3'
miRNA:   3'- -GUGGaAAAUUGUGgGUUCGAUAcuUG- -5'
28267 3' -44.5 NC_005902.1 + 170699 0.76 0.969723
Target:  5'- aACUcUUUAACACCUAAGCUAuauaUGAAUa -3'
miRNA:   3'- gUGGaAAAUUGUGGGUUCGAU----ACUUG- -5'
28267 3' -44.5 NC_005902.1 + 170531 0.71 0.999416
Target:  5'- aACCUUUUAACACCUAAaCUAUa--- -3'
miRNA:   3'- gUGGAAAAUUGUGGGUUcGAUAcuug -5'
28267 3' -44.5 NC_005902.1 + 169510 0.7 0.999633
Target:  5'- aACUcUUUAACACCUGAGCUAUa--- -3'
miRNA:   3'- gUGGaAAAUUGUGGGUUCGAUAcuug -5'
28267 3' -44.5 NC_005902.1 + 169441 0.7 0.999712
Target:  5'- aACCcUUUAACACUUAAGCUGUa--- -3'
miRNA:   3'- gUGGaAAAUUGUGGGUUCGAUAcuug -5'
28267 3' -44.5 NC_005902.1 + 169122 0.76 0.969723
Target:  5'- aACCcUUUAACACCUAAGCUAUa--- -3'
miRNA:   3'- gUGGaAAAUUGUGGGUUCGAUAcuug -5'
28267 3' -44.5 NC_005902.1 + 167247 0.75 0.988369
Target:  5'- uUACUUUUUAACACCUAAGUUAUa--- -3'
miRNA:   3'- -GUGGAAAAUUGUGGGUUCGAUAcuug -5'
28267 3' -44.5 NC_005902.1 + 167155 0.72 0.998637
Target:  5'- -uCCcUUUAACACCUAAGCUAUauACu -3'
miRNA:   3'- guGGaAAAUUGUGGGUUCGAUAcuUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.