Results 21 - 40 of 48 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28268 | 5' | -41.7 | NC_005902.1 | + | 33122 | 0.7 | 0.999998 |
Target: 5'- -aAUAaGUAUaAGCCUUAGGAUUUAAa -3' miRNA: 3'- agUGUaCAUAcUCGGAAUUCUAAAUU- -5' |
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28268 | 5' | -41.7 | NC_005902.1 | + | 42328 | 0.66 | 1 |
Target: 5'- uUUGCAUcGU-UGAuaauGCCUUAAGAUUUAAa -3' miRNA: 3'- -AGUGUA-CAuACU----CGGAAUUCUAAAUU- -5' |
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28268 | 5' | -41.7 | NC_005902.1 | + | 139779 | 0.67 | 1 |
Target: 5'- cUCAUuuaUAUaAGCCUUAGGAUUUAAa -3' miRNA: 3'- -AGUGuacAUAcUCGGAAUUCUAAAUU- -5' |
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28268 | 5' | -41.7 | NC_005902.1 | + | 184557 | 0.66 | 1 |
Target: 5'- cUCAUAUa----AGCCUUAGGAUUUAAa -3' miRNA: 3'- -AGUGUAcauacUCGGAAUUCUAAAUU- -5' |
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28268 | 5' | -41.7 | NC_005902.1 | + | 170674 | 0.68 | 1 |
Target: 5'- cUCACuuAUGUA--AGCUUUAGGGUUUAAc -3' miRNA: 3'- -AGUG--UACAUacUCGGAAUUCUAAAUU- -5' |
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28268 | 5' | -41.7 | NC_005902.1 | + | 173374 | 0.7 | 0.999999 |
Target: 5'- cUCACuUGUAU--GUCUUAAGAUUUAAa -3' miRNA: 3'- -AGUGuACAUAcuCGGAAUUCUAAAUU- -5' |
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28268 | 5' | -41.7 | NC_005902.1 | + | 85761 | 0.7 | 0.999998 |
Target: 5'- -aAUAaGUAUaAGCCUUAGGAUUUAAa -3' miRNA: 3'- agUGUaCAUAcUCGGAAUUCUAAAUU- -5' |
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28268 | 5' | -41.7 | NC_005902.1 | + | 85653 | 0.7 | 0.999998 |
Target: 5'- uUCACucaUAUaAGCCUUAGGAUUUAAc -3' miRNA: 3'- -AGUGuacAUAcUCGGAAUUCUAAAUU- -5' |
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28268 | 5' | -41.7 | NC_005902.1 | + | 95540 | 0.66 | 1 |
Target: 5'- cCACAUcGUcaucgAUGAuGCCUUAAGAgUUAAa -3' miRNA: 3'- aGUGUA-CA-----UACU-CGGAAUUCUaAAUU- -5' |
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28268 | 5' | -41.7 | NC_005902.1 | + | 113106 | 0.7 | 0.999995 |
Target: 5'- cUACAUuuacuaGUAUaAGCCUUAAGGUUUAAa -3' miRNA: 3'- aGUGUA------CAUAcUCGGAAUUCUAAAUU- -5' |
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28268 | 5' | -41.7 | NC_005902.1 | + | 46470 | 0.71 | 0.999992 |
Target: 5'- cUUACuUGUAUauaAGCCUUAGGGUUUAAc -3' miRNA: 3'- -AGUGuACAUAc--UCGGAAUUCUAAAUU- -5' |
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28268 | 5' | -41.7 | NC_005902.1 | + | 149798 | 0.75 | 0.998801 |
Target: 5'- -aACAaGUAUaAGCCUUAAGAUUUAAa -3' miRNA: 3'- agUGUaCAUAcUCGGAAUUCUAAAUU- -5' |
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28268 | 5' | -41.7 | NC_005902.1 | + | 139052 | 0.76 | 0.997814 |
Target: 5'- ---aGUGUAUaAGCCUUAAGAUUUAAa -3' miRNA: 3'- agugUACAUAcUCGGAAUUCUAAAUU- -5' |
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28268 | 5' | -41.7 | NC_005902.1 | + | 110100 | 0.77 | 0.99552 |
Target: 5'- uUCACuUGUAUaAGCUUUAGGAUUUAAa -3' miRNA: 3'- -AGUGuACAUAcUCGGAAUUCUAAAUU- -5' |
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28268 | 5' | -41.7 | NC_005902.1 | + | 24192 | 1.08 | 0.084761 |
Target: 5'- cUCACAUGUAUGAGCCUUAAGAUUUAAu -3' miRNA: 3'- -AGUGUACAUACUCGGAAUUCUAAAUU- -5' |
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28268 | 5' | -41.7 | NC_005902.1 | + | 42268 | 0.73 | 0.999767 |
Target: 5'- cUCACuUGUAUaAGCCUUAGGAcUUAAc -3' miRNA: 3'- -AGUGuACAUAcUCGGAAUUCUaAAUU- -5' |
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28268 | 5' | -41.7 | NC_005902.1 | + | 31319 | 0.76 | 0.996225 |
Target: 5'- cUCACuUGUAUaAGCUUUAGGAUUUAAg -3' miRNA: 3'- -AGUGuACAUAcUCGGAAUUCUAAAUU- -5' |
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28268 | 5' | -41.7 | NC_005902.1 | + | 15399 | 0.72 | 0.999943 |
Target: 5'- -aACAaGUGUaAGCCUUAGGGUUUAAc -3' miRNA: 3'- agUGUaCAUAcUCGGAAUUCUAAAUU- -5' |
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28268 | 5' | -41.7 | NC_005902.1 | + | 152948 | 0.72 | 0.99997 |
Target: 5'- aCGCuugauUGUAUauaAGCCUUAGGAUUUAAa -3' miRNA: 3'- aGUGu----ACAUAc--UCGGAAUUCUAAAUU- -5' |
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28268 | 5' | -41.7 | NC_005902.1 | + | 117037 | 0.71 | 0.999989 |
Target: 5'- -aGCAaauagGUAUaAGCCUUAGGAUUUAAa -3' miRNA: 3'- agUGUa----CAUAcUCGGAAUUCUAAAUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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