Results 41 - 48 of 48 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28268 | 5' | -41.7 | NC_005902.1 | + | 1521 | 0.74 | 0.999379 |
Target: 5'- -aACAaGUAUaAGCCUUAGGAUUUAAa -3' miRNA: 3'- agUGUaCAUAcUCGGAAUUCUAAAUU- -5' |
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28268 | 5' | -41.7 | NC_005902.1 | + | 46294 | 0.74 | 0.999379 |
Target: 5'- -aACAaGUAUaAGCCUUAGGAUUUAAa -3' miRNA: 3'- agUGUaCAUAcUCGGAAUUCUAAAUU- -5' |
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28268 | 5' | -41.7 | NC_005902.1 | + | 149798 | 0.75 | 0.998801 |
Target: 5'- -aACAaGUAUaAGCCUUAAGAUUUAAa -3' miRNA: 3'- agUGUaCAUAcUCGGAAUUCUAAAUU- -5' |
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28268 | 5' | -41.7 | NC_005902.1 | + | 175731 | 0.74 | 0.999699 |
Target: 5'- -aACAaGUaAUGAGCUUUAGGAUUUAAa -3' miRNA: 3'- agUGUaCA-UACUCGGAAUUCUAAAUU- -5' |
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28268 | 5' | -41.7 | NC_005902.1 | + | 42268 | 0.73 | 0.999767 |
Target: 5'- cUCACuUGUAUaAGCCUUAGGAcUUAAc -3' miRNA: 3'- -AGUGuACAUAcUCGGAAUUCUaAAUU- -5' |
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28268 | 5' | -41.7 | NC_005902.1 | + | 15399 | 0.72 | 0.999943 |
Target: 5'- -aACAaGUGUaAGCCUUAGGGUUUAAc -3' miRNA: 3'- agUGUaCAUAcUCGGAAUUCUAAAUU- -5' |
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28268 | 5' | -41.7 | NC_005902.1 | + | 152948 | 0.72 | 0.99997 |
Target: 5'- aCGCuugauUGUAUauaAGCCUUAGGAUUUAAa -3' miRNA: 3'- aGUGu----ACAUAc--UCGGAAUUCUAAAUU- -5' |
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28268 | 5' | -41.7 | NC_005902.1 | + | 17723 | 0.66 | 1 |
Target: 5'- cCACGUugcgAUGAuGCCUUAGGAaUUAAa -3' miRNA: 3'- aGUGUAca--UACU-CGGAAUUCUaAAUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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