Results 41 - 48 of 48 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position
|
R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 28268 | 5' | -41.7 | NC_005902.1 | + | 163485 | 0.72 | 0.999923 |
|
Target: 5'- -aACAaGUAU-AGCCUUAGGAUUUAAa -3' miRNA: 3'- agUGUaCAUAcUCGGAAUUCUAAAUU- -5' |
|||||||
| 28268 | 5' | -41.7 | NC_005902.1 | + | 168398 | 0.68 | 1 |
|
Target: 5'- -aAUAaGUAUaAGCCUUAGGGUUUAAa -3' miRNA: 3'- agUGUaCAUAcUCGGAAUUCUAAAUU- -5' |
|||||||
| 28268 | 5' | -41.7 | NC_005902.1 | + | 169633 | 0.68 | 1 |
|
Target: 5'- gCACAcuUGUAUaaAGCUUUGGGAUUUAAu -3' miRNA: 3'- aGUGU--ACAUAc-UCGGAAUUCUAAAUU- -5' |
|||||||
| 28268 | 5' | -41.7 | NC_005902.1 | + | 170674 | 0.68 | 1 |
|
Target: 5'- cUCACuuAUGUA--AGCUUUAGGGUUUAAc -3' miRNA: 3'- -AGUG--UACAUacUCGGAAUUCUAAAUU- -5' |
|||||||
| 28268 | 5' | -41.7 | NC_005902.1 | + | 173374 | 0.7 | 0.999999 |
|
Target: 5'- cUCACuUGUAU--GUCUUAAGAUUUAAa -3' miRNA: 3'- -AGUGuACAUAcuCGGAAUUCUAAAUU- -5' |
|||||||
| 28268 | 5' | -41.7 | NC_005902.1 | + | 175731 | 0.74 | 0.999699 |
|
Target: 5'- -aACAaGUaAUGAGCUUUAGGAUUUAAa -3' miRNA: 3'- agUGUaCA-UACUCGGAAUUCUAAAUU- -5' |
|||||||
| 28268 | 5' | -41.7 | NC_005902.1 | + | 177401 | 0.67 | 1 |
|
Target: 5'- aUCGCAaacaaGUAUaAGCCaUAAGAUUUAAa -3' miRNA: 3'- -AGUGUa----CAUAcUCGGaAUUCUAAAUU- -5' |
|||||||
| 28268 | 5' | -41.7 | NC_005902.1 | + | 184557 | 0.66 | 1 |
|
Target: 5'- cUCAUAUa----AGCCUUAGGAUUUAAa -3' miRNA: 3'- -AGUGUAcauacUCGGAAUUCUAAAUU- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home