Results 41 - 48 of 48 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position
|
R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 28268 | 5' | -41.7 | NC_005902.1 | + | 24192 | 1.08 | 0.084761 |
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Target: 5'- cUCACAUGUAUGAGCCUUAAGAUUUAAu -3' miRNA: 3'- -AGUGUACAUACUCGGAAUUCUAAAUU- -5' |
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| 28268 | 5' | -41.7 | NC_005902.1 | + | 17723 | 0.66 | 1 |
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Target: 5'- cCACGUugcgAUGAuGCCUUAGGAaUUAAa -3' miRNA: 3'- aGUGUAca--UACU-CGGAAUUCUaAAUU- -5' |
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| 28268 | 5' | -41.7 | NC_005902.1 | + | 17676 | 0.69 | 0.999999 |
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Target: 5'- uUCACuuaUAUaAGCCUUAGGGUUUAAa -3' miRNA: 3'- -AGUGuacAUAcUCGGAAUUCUAAAUU- -5' |
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| 28268 | 5' | -41.7 | NC_005902.1 | + | 15399 | 0.72 | 0.999943 |
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Target: 5'- -aACAaGUGUaAGCCUUAGGGUUUAAc -3' miRNA: 3'- agUGUaCAUAcUCGGAAUUCUAAAUU- -5' |
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| 28268 | 5' | -41.7 | NC_005902.1 | + | 12699 | 0.73 | 0.999821 |
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Target: 5'- -gACA-GUAUaAGCCUUAAGAUUUAAc -3' miRNA: 3'- agUGUaCAUAcUCGGAAUUCUAAAUU- -5' |
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| 28268 | 5' | -41.7 | NC_005902.1 | + | 10342 | 0.71 | 0.999992 |
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Target: 5'- uUUACucGUAUaAGCCUUAGGAUUUAAa -3' miRNA: 3'- -AGUGuaCAUAcUCGGAAUUCUAAAUU- -5' |
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| 28268 | 5' | -41.7 | NC_005902.1 | + | 8667 | 0.7 | 0.999995 |
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Target: 5'- cUCAUcUGUAUaAGCCaUAAGAUUUAAa -3' miRNA: 3'- -AGUGuACAUAcUCGGaAUUCUAAAUU- -5' |
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| 28268 | 5' | -41.7 | NC_005902.1 | + | 1521 | 0.74 | 0.999379 |
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Target: 5'- -aACAaGUAUaAGCCUUAGGAUUUAAa -3' miRNA: 3'- agUGUaCAUAcUCGGAAUUCUAAAUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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