miRNA display CGI


Results 41 - 60 of 375 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28269 3' -40.6 NC_005902.1 + 127469 0.67 1
Target:  5'- --uACUcUUUAACACaUAAGCUAUAUa -3'
miRNA:   3'- aauUGGaAAAUUGUGgAUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 84812 0.67 1
Target:  5'- uUUAACCcUUUAAC-UCUuAGCUAUAUg -3'
miRNA:   3'- -AAUUGGaAAAUUGuGGAuUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 7599 0.67 1
Target:  5'- --cACCcUUUAACACCUAAaUUAUAUa -3'
miRNA:   3'- aauUGGaAAAUUGUGGAUUcGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 6310 0.67 1
Target:  5'- uUUAAUC-UUUAAgACCUAAGCcAUAUa -3'
miRNA:   3'- -AAUUGGaAAAUUgUGGAUUCGaUAUA- -5'
28269 3' -40.6 NC_005902.1 + 40902 0.67 1
Target:  5'- uUUAACUUguuaauccUUAAUACCUAAaGCUAUAa -3'
miRNA:   3'- -AAUUGGAa-------AAUUGUGGAUU-CGAUAUa -5'
28269 3' -40.6 NC_005902.1 + 101173 0.67 1
Target:  5'- -aAGCCUUaagauuuaauggaUUAAUAUUUAAGCUAUAc -3'
miRNA:   3'- aaUUGGAA-------------AAUUGUGGAUUCGAUAUa -5'
28269 3' -40.6 NC_005902.1 + 23406 0.67 1
Target:  5'- gUUAAagggUUAACACCcAAGCUAUAUa -3'
miRNA:   3'- -AAUUggaaAAUUGUGGaUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 20057 0.68 1
Target:  5'- aUUAACCcUUUAACACaUAAGCcAUAUa -3'
miRNA:   3'- -AAUUGGaAAAUUGUGgAUUCGaUAUA- -5'
28269 3' -40.6 NC_005902.1 + 51416 0.68 1
Target:  5'- aUUAAagggUUAAUAUCUAAGCUAUAUa -3'
miRNA:   3'- -AAUUggaaAAUUGUGGAUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 93711 0.68 1
Target:  5'- aUUAuCCUU----UACCUAAGCUAUAUa -3'
miRNA:   3'- -AAUuGGAAaauuGUGGAUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 101068 0.68 1
Target:  5'- uUUAACCcUUUAACAUCUAcaCUAUAUa -3'
miRNA:   3'- -AAUUGGaAAAUUGUGGAUucGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 159442 0.68 1
Target:  5'- cUUAACCUUUUAAUACUUAuGUuuUAUAa -3'
miRNA:   3'- -AAUUGGAAAAUUGUGGAUuCG--AUAUa -5'
28269 3' -40.6 NC_005902.1 + 23313 0.68 1
Target:  5'- --------aUAACAUCUAAGCUAUAUg -3'
miRNA:   3'- aauuggaaaAUUGUGGAUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 67571 0.68 1
Target:  5'- -aAACCUUaaaauuuaaaaagUUAACAUCUAAGCUc--- -3'
miRNA:   3'- aaUUGGAA-------------AAUUGUGGAUUCGAuaua -5'
28269 3' -40.6 NC_005902.1 + 157171 0.68 1
Target:  5'- aUGcCCUaggaaUUAAUACCUAAGUUAUAUa -3'
miRNA:   3'- aAUuGGAa----AAUUGUGGAUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 38412 0.68 1
Target:  5'- -------aUUAACAUCUAAGCUAUAc -3'
miRNA:   3'- aauuggaaAAUUGUGGAUUCGAUAUa -5'
28269 3' -40.6 NC_005902.1 + 68949 0.68 1
Target:  5'- aUAAUauaaggUUAAUACUUAAGCUAUAUa -3'
miRNA:   3'- aAUUGgaa---AAUUGUGGAUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 26884 0.68 1
Target:  5'- --uACCUUUU-AUGCCUGGuGCUAUGUg -3'
miRNA:   3'- aauUGGAAAAuUGUGGAUU-CGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 67358 0.68 1
Target:  5'- --uACCUUUUAACAaCUAAGUUAg-- -3'
miRNA:   3'- aauUGGAAAAUUGUgGAUUCGAUaua -5'
28269 3' -40.6 NC_005902.1 + 116877 0.68 1
Target:  5'- aUUAACCcUUUAAUuCCUAAGaCUAUAc -3'
miRNA:   3'- -AAUUGGaAAAUUGuGGAUUC-GAUAUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.