Results 21 - 40 of 375 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28269 | 3' | -40.6 | NC_005902.1 | + | 169979 | 0.66 | 1 |
Target: 5'- aUUAACCcuu---UAUCUAAGCUAUAUa -3' miRNA: 3'- -AAUUGGaaaauuGUGGAUUCGAUAUA- -5' |
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28269 | 3' | -40.6 | NC_005902.1 | + | 171082 | 0.66 | 1 |
Target: 5'- uUUAACCUUUUAAU-CCUAAGgUuUAUa -3' miRNA: 3'- -AAUUGGAAAAUUGuGGAUUCgAuAUA- -5' |
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28269 | 3' | -40.6 | NC_005902.1 | + | 179466 | 0.66 | 1 |
Target: 5'- uUUAAagggUUAACACCUAAGUUAUu- -3' miRNA: 3'- -AAUUggaaAAUUGUGGAUUCGAUAua -5' |
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28269 | 3' | -40.6 | NC_005902.1 | + | 76020 | 0.66 | 1 |
Target: 5'- gUAACCcUUUAACuCCUAAGgUAUu- -3' miRNA: 3'- aAUUGGaAAAUUGuGGAUUCgAUAua -5' |
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28269 | 3' | -40.6 | NC_005902.1 | + | 109995 | 0.66 | 1 |
Target: 5'- uUUAuCCUUc-AAUAUCUAAGCUAUAUu -3' miRNA: 3'- -AAUuGGAAaaUUGUGGAUUCGAUAUA- -5' |
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28269 | 3' | -40.6 | NC_005902.1 | + | 23974 | 0.66 | 1 |
Target: 5'- uUUAAUCcUUUAACAUCUAAaCUAUAUa -3' miRNA: 3'- -AAUUGGaAAAUUGUGGAUUcGAUAUA- -5' |
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28269 | 3' | -40.6 | NC_005902.1 | + | 48459 | 0.66 | 1 |
Target: 5'- -cAACCUUUUAGCuCCUAuGGCa---- -3' miRNA: 3'- aaUUGGAAAAUUGuGGAU-UCGauaua -5' |
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28269 | 3' | -40.6 | NC_005902.1 | + | 148614 | 0.66 | 1 |
Target: 5'- uUUAACCcUUUAAUACCUAuaUUAUAUa -3' miRNA: 3'- -AAUUGGaAAAUUGUGGAUucGAUAUA- -5' |
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28269 | 3' | -40.6 | NC_005902.1 | + | 124330 | 0.66 | 1 |
Target: 5'- uUUAAUCUUUUAAUACUUAAaaUAUAUg -3' miRNA: 3'- -AAUUGGAAAAUUGUGGAUUcgAUAUA- -5' |
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28269 | 3' | -40.6 | NC_005902.1 | + | 5112 | 0.66 | 1 |
Target: 5'- --cACUcUUUAACAUCUAAGCaAUAUa -3' miRNA: 3'- aauUGGaAAAUUGUGGAUUCGaUAUA- -5' |
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28269 | 3' | -40.6 | NC_005902.1 | + | 84812 | 0.67 | 1 |
Target: 5'- uUUAACCcUUUAAC-UCUuAGCUAUAUg -3' miRNA: 3'- -AAUUGGaAAAUUGuGGAuUCGAUAUA- -5' |
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28269 | 3' | -40.6 | NC_005902.1 | + | 39405 | 0.67 | 1 |
Target: 5'- gUUAAaggug-AAUACCUAAGCUAUAUa -3' miRNA: 3'- -AAUUggaaaaUUGUGGAUUCGAUAUA- -5' |
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28269 | 3' | -40.6 | NC_005902.1 | + | 69066 | 0.67 | 1 |
Target: 5'- --uAUUUgUUAACACCUAAGCUuaAUAUg -3' miRNA: 3'- aauUGGAaAAUUGUGGAUUCGA--UAUA- -5' |
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28269 | 3' | -40.6 | NC_005902.1 | + | 160882 | 0.67 | 1 |
Target: 5'- ------aUUUAACcCCUAAGCUAUAUa -3' miRNA: 3'- aauuggaAAAUUGuGGAUUCGAUAUA- -5' |
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28269 | 3' | -40.6 | NC_005902.1 | + | 122584 | 0.67 | 1 |
Target: 5'- uUUAACCUUUUAAUuCCUAAgGCa---- -3' miRNA: 3'- -AAUUGGAAAAUUGuGGAUU-CGauaua -5' |
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28269 | 3' | -40.6 | NC_005902.1 | + | 127469 | 0.67 | 1 |
Target: 5'- --uACUcUUUAACACaUAAGCUAUAUa -3' miRNA: 3'- aauUGGaAAAUUGUGgAUUCGAUAUA- -5' |
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28269 | 3' | -40.6 | NC_005902.1 | + | 73034 | 0.67 | 1 |
Target: 5'- cUUAACCcUUUAAUACUUAAGUaAUAUu -3' miRNA: 3'- -AAUUGGaAAAUUGUGGAUUCGaUAUA- -5' |
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28269 | 3' | -40.6 | NC_005902.1 | + | 8168 | 0.67 | 1 |
Target: 5'- aUUAAUCc--UAACAUUUAAGCUAUAUa -3' miRNA: 3'- -AAUUGGaaaAUUGUGGAUUCGAUAUA- -5' |
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28269 | 3' | -40.6 | NC_005902.1 | + | 110863 | 0.67 | 1 |
Target: 5'- ----aCUUUUAACucuuuACCUAAGUUAUAUa -3' miRNA: 3'- aauugGAAAAUUG-----UGGAUUCGAUAUA- -5' |
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28269 | 3' | -40.6 | NC_005902.1 | + | 162588 | 0.67 | 1 |
Target: 5'- gUUAAUa----AAUACCUAAGCUAUAUa -3' miRNA: 3'- -AAUUGgaaaaUUGUGGAUUCGAUAUA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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