miRNA display CGI


Results 21 - 40 of 375 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28269 3' -40.6 NC_005902.1 + 12538 0.69 1
Target:  5'- uUUAACCcUUUAAUACCUAAaUUAUAUa -3'
miRNA:   3'- -AAUUGGaAAAUUGUGGAUUcGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 12821 0.78 0.995875
Target:  5'- uUUAACCcUUUAACuCCUAAGUUAUAUa -3'
miRNA:   3'- -AAUUGGaAAAUUGuGGAUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 13178 0.95 0.437685
Target:  5'- uUUAACCcUUUAACACCUAAGCUAUAUa -3'
miRNA:   3'- -AAUUGGaAAAUUGUGGAUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 13394 0.83 0.940273
Target:  5'- gUUAACCU---AAUACCUAAGCUAUAUa -3'
miRNA:   3'- -AAUUGGAaaaUUGUGGAUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 15145 0.91 0.63932
Target:  5'- cUUAACCUUUUAACAUgUAAGCUAUAUa -3'
miRNA:   3'- -AAUUGGAAAAUUGUGgAUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 15419 0.91 0.63932
Target:  5'- uUUAACUcUUUAACACCUAAGCUAUAUa -3'
miRNA:   3'- -AAUUGGaAAAUUGUGGAUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 15695 0.68 1
Target:  5'- ----aCUUUUAACACCUAAGauuUAUAg -3'
miRNA:   3'- aauugGAAAAUUGUGGAUUCg--AUAUa -5'
28269 3' -40.6 NC_005902.1 + 16463 0.79 0.989305
Target:  5'- --uACCUUUUAACACCUAAaCUAUAc -3'
miRNA:   3'- aauUGGAAAAUUGUGGAUUcGAUAUa -5'
28269 3' -40.6 NC_005902.1 + 16510 0.74 0.999891
Target:  5'- aUUAACCcugUAACACCUGAGaUAUAUa -3'
miRNA:   3'- -AAUUGGaaaAUUGUGGAUUCgAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 16873 0.82 0.963228
Target:  5'- cUUAuCCU-UUAACACCUAAGCUAUAUc -3'
miRNA:   3'- -AAUuGGAaAAUUGUGGAUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 16888 0.79 0.989305
Target:  5'- ----aCUUUUAACAUCUAAGCUAUGa -3'
miRNA:   3'- aauugGAAAAUUGUGGAUUCGAUAUa -5'
28269 3' -40.6 NC_005902.1 + 18748 0.82 0.959228
Target:  5'- --uACCcUUUAACACCUAAGUUAUAUa -3'
miRNA:   3'- aauUGGaAAAUUGUGGAUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 18852 1.05 0.144895
Target:  5'- gUUAACCUUUUAACACCUAAGCUAUAUa -3'
miRNA:   3'- -AAUUGGAAAAUUGUGGAUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 19880 0.66 1
Target:  5'- uUUAAUCU--UAAUAUCUAAGCUAc-- -3'
miRNA:   3'- -AAUUGGAaaAUUGUGGAUUCGAUaua -5'
28269 3' -40.6 NC_005902.1 + 20057 0.68 1
Target:  5'- aUUAACCcUUUAACACaUAAGCcAUAUa -3'
miRNA:   3'- -AAUUGGaAAAUUGUGgAUUCGaUAUA- -5'
28269 3' -40.6 NC_005902.1 + 20276 0.75 0.999471
Target:  5'- gUUAAUCcUUUAACACCUAAGUUAa-- -3'
miRNA:   3'- -AAUUGGaAAAUUGUGGAUUCGAUaua -5'
28269 3' -40.6 NC_005902.1 + 21161 0.79 0.989305
Target:  5'- uUUAACUcccUUUAACACUUAAGCUAUAUa -3'
miRNA:   3'- -AAUUGGa--AAAUUGUGGAUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 21308 0.92 0.604291
Target:  5'- --uACCUUUUAACAUCUAAGCUAUAUa -3'
miRNA:   3'- aauUGGAAAAUUGUGGAUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 22598 0.9 0.661491
Target:  5'- aUAGCCUUaggauuuaaagggUUAACACCUAAGCUAUAUa -3'
miRNA:   3'- aAUUGGAA-------------AAUUGUGGAUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 23214 0.79 0.993206
Target:  5'- cUAACUUUcUAAUAUCUAAGCUAUAUg -3'
miRNA:   3'- aAUUGGAAaAUUGUGGAUUCGAUAUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.