Results 21 - 40 of 375 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28269 | 3' | -40.6 | NC_005902.1 | + | 169119 | 0.95 | 0.437685 |
Target: 5'- gUUAACCcUUUAACACCUAAGCUAUAUa -3' miRNA: 3'- -AAUUGGaAAAUUGUGGAUUCGAUAUA- -5' |
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28269 | 3' | -40.6 | NC_005902.1 | + | 97171 | 0.95 | 0.437685 |
Target: 5'- uUUAACCcUUUAACACCUAAGCUAUAUa -3' miRNA: 3'- -AAUUGGaAAAUUGUGGAUUCGAUAUA- -5' |
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28269 | 3' | -40.6 | NC_005902.1 | + | 13178 | 0.95 | 0.437685 |
Target: 5'- uUUAACCcUUUAACACCUAAGCUAUAUa -3' miRNA: 3'- -AAUUGGaAAAUUGUGGAUUCGAUAUA- -5' |
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28269 | 3' | -40.6 | NC_005902.1 | + | 120242 | 0.95 | 0.448036 |
Target: 5'- cUAACCcUUUAACACCUGAGCUAUAUg -3' miRNA: 3'- aAUUGGaAAAUUGUGGAUUCGAUAUA- -5' |
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28269 | 3' | -40.6 | NC_005902.1 | + | 156544 | 0.95 | 0.448036 |
Target: 5'- uUUAcCCUUUUAACACCUAAGCUAUAUa -3' miRNA: 3'- -AAUuGGAAAAUUGUGGAUUCGAUAUA- -5' |
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28269 | 3' | -40.6 | NC_005902.1 | + | 47231 | 0.95 | 0.448036 |
Target: 5'- cUUAACCcUUUAACACCUAAGCUAUAUa -3' miRNA: 3'- -AAUUGGaAAAUUGUGGAUUCGAUAUA- -5' |
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28269 | 3' | -40.6 | NC_005902.1 | + | 174588 | 0.94 | 0.479876 |
Target: 5'- gUGACCgagUUAACACCUAAGCUAUAUa -3' miRNA: 3'- aAUUGGaa-AAUUGUGGAUUCGAUAUA- -5' |
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28269 | 3' | -40.6 | NC_005902.1 | + | 159736 | 0.94 | 0.479876 |
Target: 5'- gUUAAUCUUUUAAUACCUAAGCUAUAUa -3' miRNA: 3'- -AAUUGGAAAAUUGUGGAUUCGAUAUA- -5' |
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28269 | 3' | -40.6 | NC_005902.1 | + | 117039 | 0.94 | 0.490734 |
Target: 5'- uUUAACCUUUUAAUACUUAAGCUAUAUa -3' miRNA: 3'- -AAUUGGAAAAUUGUGGAUUCGAUAUA- -5' |
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28269 | 3' | -40.6 | NC_005902.1 | + | 108896 | 0.94 | 0.512782 |
Target: 5'- uUUAACCUUUUAACAgCUAGGCUAUAUa -3' miRNA: 3'- -AAUUGGAAAAUUGUgGAUUCGAUAUA- -5' |
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28269 | 3' | -40.6 | NC_005902.1 | + | 67701 | 0.93 | 0.523959 |
Target: 5'- aUUAACCUUUUAACuCCUAGGCUAUAUa -3' miRNA: 3'- -AAUUGGAAAAUUGuGGAUUCGAUAUA- -5' |
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28269 | 3' | -40.6 | NC_005902.1 | + | 131660 | 0.93 | 0.546579 |
Target: 5'- uUUAACCcUUUAACACCUAAGCUAUAc -3' miRNA: 3'- -AAUUGGaAAAUUGUGGAUUCGAUAUa -5' |
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28269 | 3' | -40.6 | NC_005902.1 | + | 46930 | 0.92 | 0.581053 |
Target: 5'- uUUAACCUgUUAAUACCUAAGCUAUAUg -3' miRNA: 3'- -AAUUGGAaAAUUGUGGAUUCGAUAUA- -5' |
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28269 | 3' | -40.6 | NC_005902.1 | + | 85050 | 0.92 | 0.592653 |
Target: 5'- aUUAGCUUUUUAACAUCUAGGCUAUAUa -3' miRNA: 3'- -AAUUGGAAAAUUGUGGAUUCGAUAUA- -5' |
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28269 | 3' | -40.6 | NC_005902.1 | + | 28152 | 0.92 | 0.604291 |
Target: 5'- --uAUCUUUUAACACCUAAGCUAUAUa -3' miRNA: 3'- aauUGGAAAAUUGUGGAUUCGAUAUA- -5' |
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28269 | 3' | -40.6 | NC_005902.1 | + | 21308 | 0.92 | 0.604291 |
Target: 5'- --uACCUUUUAACAUCUAAGCUAUAUa -3' miRNA: 3'- aauUGGAAAAUUGUGGAUUCGAUAUA- -5' |
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28269 | 3' | -40.6 | NC_005902.1 | + | 71205 | 0.92 | 0.604291 |
Target: 5'- aUAACCUUUUAAUGCUUAAGCUAUAUa -3' miRNA: 3'- aAUUGGAAAAUUGUGGAUUCGAUAUA- -5' |
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28269 | 3' | -40.6 | NC_005902.1 | + | 95762 | 0.91 | 0.615955 |
Target: 5'- --uACCUUUUAACACUUAAGCUAUAUa -3' miRNA: 3'- aauUGGAAAAUUGUGGAUUCGAUAUA- -5' |
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28269 | 3' | -40.6 | NC_005902.1 | + | 68932 | 0.91 | 0.615955 |
Target: 5'- --uACCUUUUAACACUUAAGCUAUAUa -3' miRNA: 3'- aauUGGAAAAUUGUGGAUUCGAUAUA- -5' |
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28269 | 3' | -40.6 | NC_005902.1 | + | 169507 | 0.91 | 0.627635 |
Target: 5'- uUUAACUcUUUAACACCUGAGCUAUAUa -3' miRNA: 3'- -AAUUGGaAAAUUGUGGAUUCGAUAUA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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