Results 21 - 40 of 375 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28269 | 3' | -40.6 | NC_005902.1 | + | 95762 | 0.91 | 0.615955 |
Target: 5'- --uACCUUUUAACACUUAAGCUAUAUa -3' miRNA: 3'- aauUGGAAAAUUGUGGAUUCGAUAUA- -5' |
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28269 | 3' | -40.6 | NC_005902.1 | + | 21308 | 0.92 | 0.604291 |
Target: 5'- --uACCUUUUAACAUCUAAGCUAUAUa -3' miRNA: 3'- aauUGGAAAAUUGUGGAUUCGAUAUA- -5' |
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28269 | 3' | -40.6 | NC_005902.1 | + | 99552 | 0.95 | 0.437685 |
Target: 5'- uUUAACCcUUUAACACCUAAGCUAUAUa -3' miRNA: 3'- -AAUUGGaAAAUUGUGGAUUCGAUAUA- -5' |
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28269 | 3' | -40.6 | NC_005902.1 | + | 137769 | 0.99 | 0.308596 |
Target: 5'- uUUAACUUUUUAACACCUAAGCUAUAUa -3' miRNA: 3'- -AAUUGGAAAAUUGUGGAUUCGAUAUA- -5' |
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28269 | 3' | -40.6 | NC_005902.1 | + | 61616 | 0.89 | 0.731471 |
Target: 5'- uUUAACCcUUUAACAUCUAAGCUAUAUa -3' miRNA: 3'- -AAUUGGaAAAUUGUGGAUUCGAUAUA- -5' |
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28269 | 3' | -40.6 | NC_005902.1 | + | 163382 | 0.9 | 0.697385 |
Target: 5'- uUUAAcCCUUUUAACAUCUAAGCUAUAUa -3' miRNA: 3'- -AAUU-GGAAAAUUGUGGAUUCGAUAUA- -5' |
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28269 | 3' | -40.6 | NC_005902.1 | + | 46930 | 0.92 | 0.581053 |
Target: 5'- uUUAACCUgUUAAUACCUAAGCUAUAUg -3' miRNA: 3'- -AAUUGGAaAAUUGUGGAUUCGAUAUA- -5' |
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28269 | 3' | -40.6 | NC_005902.1 | + | 116627 | 0.99 | 0.308596 |
Target: 5'- uUUAACUUUUUAACACCUAAGCUAUAUa -3' miRNA: 3'- -AAUUGGAAAAUUGUGGAUUCGAUAUA- -5' |
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28269 | 3' | -40.6 | NC_005902.1 | + | 3070 | 0.9 | 0.674281 |
Target: 5'- aUUAACgaUUUAACACCUAAGCUAUAUa -3' miRNA: 3'- -AAUUGgaAAAUUGUGGAUUCGAUAUA- -5' |
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28269 | 3' | -40.6 | NC_005902.1 | + | 52768 | 1 | 0.285011 |
Target: 5'- uUUAACCUUUUAACACCUAAGUUAUAUa -3' miRNA: 3'- -AAUUGGAAAAUUGUGGAUUCGAUAUA- -5' |
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28269 | 3' | -40.6 | NC_005902.1 | + | 85050 | 0.92 | 0.592653 |
Target: 5'- aUUAGCUUUUUAACAUCUAGGCUAUAUa -3' miRNA: 3'- -AAUUGGAAAAUUGUGGAUUCGAUAUA- -5' |
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28269 | 3' | -40.6 | NC_005902.1 | + | 169507 | 0.91 | 0.627635 |
Target: 5'- uUUAACUcUUUAACACCUGAGCUAUAUa -3' miRNA: 3'- -AAUUGGaAAAUUGUGGAUUCGAUAUA- -5' |
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28269 | 3' | -40.6 | NC_005902.1 | + | 117039 | 0.94 | 0.490734 |
Target: 5'- uUUAACCUUUUAAUACUUAAGCUAUAUa -3' miRNA: 3'- -AAUUGGAAAAUUGUGGAUUCGAUAUA- -5' |
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28269 | 3' | -40.6 | NC_005902.1 | + | 50207 | 0.95 | 0.437685 |
Target: 5'- aUAACCcUUUAACACCUAAGCUAUAUa -3' miRNA: 3'- aAUUGGaAAAUUGUGGAUUCGAUAUA- -5' |
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28269 | 3' | -40.6 | NC_005902.1 | + | 13178 | 0.95 | 0.437685 |
Target: 5'- uUUAACCcUUUAACACCUAAGCUAUAUa -3' miRNA: 3'- -AAUUGGaAAAUUGUGGAUUCGAUAUA- -5' |
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28269 | 3' | -40.6 | NC_005902.1 | + | 45077 | 0.98 | 0.333641 |
Target: 5'- --uACCUUUUAACACCUAAGCUAUAUa -3' miRNA: 3'- aauUGGAAAAUUGUGGAUUCGAUAUA- -5' |
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28269 | 3' | -40.6 | NC_005902.1 | + | 172601 | 0.89 | 0.742628 |
Target: 5'- uUUAACCcUUUAACACUUAAGCUAUAUa -3' miRNA: 3'- -AAUUGGaAAAUUGUGGAUUCGAUAUA- -5' |
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28269 | 3' | -40.6 | NC_005902.1 | + | 85336 | 0.89 | 0.731471 |
Target: 5'- uUUAACCcUUUAACAUCUAAGCUAUAUa -3' miRNA: 3'- -AAUUGGaAAAUUGUGGAUUCGAUAUA- -5' |
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28269 | 3' | -40.6 | NC_005902.1 | + | 170528 | 0.89 | 0.708836 |
Target: 5'- aUUAACCUUUUAACACCUAAaCUAUAUa -3' miRNA: 3'- -AAUUGGAAAAUUGUGGAUUcGAUAUA- -5' |
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28269 | 3' | -40.6 | NC_005902.1 | + | 137432 | 0.89 | 0.708836 |
Target: 5'- --cACCUUUUAACAUCUAAGCUAUAc -3' miRNA: 3'- aauUGGAAAAUUGUGGAUUCGAUAUa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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