miRNA display CGI


Results 1 - 20 of 375 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28269 3' -40.6 NC_005902.1 + 105938 1.05 0.144895
Target:  5'- uUUAACCUUUUAACACCUAAGCUAUAUa -3'
miRNA:   3'- -AAUUGGAAAAUUGUGGAUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 46930 0.92 0.581053
Target:  5'- uUUAACCUgUUAAUACCUAAGCUAUAUg -3'
miRNA:   3'- -AAUUGGAaAAUUGUGGAUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 21308 0.92 0.604291
Target:  5'- --uACCUUUUAACAUCUAAGCUAUAUa -3'
miRNA:   3'- aauUGGAAAAUUGUGGAUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 127607 0.66 1
Target:  5'- -aAAUUUgUUAAUGCUUAAGCUAUGUu -3'
miRNA:   3'- aaUUGGAaAAUUGUGGAUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 45077 0.98 0.333641
Target:  5'- --uACCUUUUAACACCUAAGCUAUAUa -3'
miRNA:   3'- aauUGGAAAAUUGUGGAUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 42233 0.97 0.37861
Target:  5'- uUUAACCUcUUAACACCUAAGCUAUAUa -3'
miRNA:   3'- -AAUUGGAaAAUUGUGGAUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 13178 0.95 0.437685
Target:  5'- uUUAACCcUUUAACACCUAAGCUAUAUa -3'
miRNA:   3'- -AAUUGGaAAAUUGUGGAUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 91853 0.95 0.437685
Target:  5'- uUUAACCcUUUAACACCUAAGCUAUAUa -3'
miRNA:   3'- -AAUUGGaAAAUUGUGGAUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 50207 0.95 0.437685
Target:  5'- aUAACCcUUUAACACCUAAGCUAUAUa -3'
miRNA:   3'- aAUUGGaAAAUUGUGGAUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 67701 0.93 0.523959
Target:  5'- aUUAACCUUUUAACuCCUAGGCUAUAUa -3'
miRNA:   3'- -AAUUGGAAAAUUGuGGAUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 174588 0.94 0.479876
Target:  5'- gUGACCgagUUAACACCUAAGCUAUAUa -3'
miRNA:   3'- aAUUGGaa-AAUUGUGGAUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 99552 0.95 0.437685
Target:  5'- uUUAACCcUUUAACACCUAAGCUAUAUa -3'
miRNA:   3'- -AAUUGGaAAAUUGUGGAUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 52768 1 0.285011
Target:  5'- uUUAACCUUUUAACACCUAAGUUAUAUa -3'
miRNA:   3'- -AAUUGGAAAAUUGUGGAUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 117039 0.94 0.490734
Target:  5'- uUUAACCUUUUAAUACUUAAGCUAUAUa -3'
miRNA:   3'- -AAUUGGAAAAUUGUGGAUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 116627 0.99 0.308596
Target:  5'- uUUAACUUUUUAACACCUAAGCUAUAUa -3'
miRNA:   3'- -AAUUGGAAAAUUGUGGAUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 97171 0.95 0.437685
Target:  5'- uUUAACCcUUUAACACCUAAGCUAUAUa -3'
miRNA:   3'- -AAUUGGaAAAUUGUGGAUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 108896 0.94 0.512782
Target:  5'- uUUAACCUUUUAACAgCUAGGCUAUAUa -3'
miRNA:   3'- -AAUUGGAAAAUUGUgGAUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 85050 0.92 0.592653
Target:  5'- aUUAGCUUUUUAACAUCUAGGCUAUAUa -3'
miRNA:   3'- -AAUUGGAAAAUUGUGGAUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 137769 0.99 0.308596
Target:  5'- uUUAACUUUUUAACACCUAAGCUAUAUa -3'
miRNA:   3'- -AAUUGGAAAAUUGUGGAUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 23252 0.96 0.427472
Target:  5'- aUUAACCcUUUAACACCUAAGCUAUAUa -3'
miRNA:   3'- -AAUUGGaAAAUUGUGGAUUCGAUAUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.