miRNA display CGI


Results 1 - 20 of 375 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28269 3' -40.6 NC_005902.1 + 1143 0.83 0.950352
Target:  5'- -gAACCcUUUAAgACCUAAGCUGUAUa -3'
miRNA:   3'- aaUUGGaAAAUUgUGGAUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 1195 0.73 0.999977
Target:  5'- gUUAAagggUUAACACCUAAGUUAUAUa -3'
miRNA:   3'- -AAUUggaaAAUUGUGGAUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 1257 0.81 0.979174
Target:  5'- gUUAACUcUUcAACACCUAGGCUAUAUa -3'
miRNA:   3'- -AAUUGGaAAaUUGUGGAUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 1407 0.77 0.997123
Target:  5'- --cACCuUUUUAACcCCUAAGCUAUAUa -3'
miRNA:   3'- aauUGG-AAAAUUGuGGAUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 1713 0.66 1
Target:  5'- ------cUUUAAUAUCUAAGCUAUAUu -3'
miRNA:   3'- aauuggaAAAUUGUGGAUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 3001 0.75 0.999731
Target:  5'- aUUAAuCCUUcaguuuuuaaaauaUUAACAUCUAAGCUAUAUa -3'
miRNA:   3'- -AAUU-GGAA--------------AAUUGUGGAUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 3070 0.9 0.674281
Target:  5'- aUUAACgaUUUAACACCUAAGCUAUAUa -3'
miRNA:   3'- -AAUUGgaAAAUUGUGGAUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 3361 0.74 0.999882
Target:  5'- --uAUCUUUUAguuuuuaaaggguuACACCUAAGCUAUAc -3'
miRNA:   3'- aauUGGAAAAU--------------UGUGGAUUCGAUAUa -5'
28269 3' -40.6 NC_005902.1 + 4192 0.88 0.764549
Target:  5'- aUAACCUUUUAAUAUUUAAGCUAUAUa -3'
miRNA:   3'- aAUUGGAAAAUUGUGGAUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 4608 0.66 1
Target:  5'- aUAuCC-UUUAACAUCUAAGCgAUAUa -3'
miRNA:   3'- aAUuGGaAAAUUGUGGAUUCGaUAUA- -5'
28269 3' -40.6 NC_005902.1 + 5112 0.66 1
Target:  5'- --cACUcUUUAACAUCUAAGCaAUAUa -3'
miRNA:   3'- aauUGGaAAAUUGUGGAUUCGaUAUA- -5'
28269 3' -40.6 NC_005902.1 + 5382 0.66 1
Target:  5'- --cACCUUUUAACAaCUAAaCUAUAUa -3'
miRNA:   3'- aauUGGAAAAUUGUgGAUUcGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 5644 0.74 0.999891
Target:  5'- uUUAACCcUUUAACAaUUAAGCUAUAUa -3'
miRNA:   3'- -AAUUGGaAAAUUGUgGAUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 6310 0.67 1
Target:  5'- uUUAAUC-UUUAAgACCUAAGCcAUAUa -3'
miRNA:   3'- -AAUUGGaAAAUUgUGGAUUCGaUAUA- -5'
28269 3' -40.6 NC_005902.1 + 7599 0.67 1
Target:  5'- --cACCcUUUAACACCUAAaUUAUAUa -3'
miRNA:   3'- aauUGGaAAAUUGUGGAUUcGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 8168 0.67 1
Target:  5'- aUUAAUCc--UAACAUUUAAGCUAUAUa -3'
miRNA:   3'- -AAUUGGaaaAUUGUGGAUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 8413 0.75 0.999471
Target:  5'- --cACUUUUUAACACCUAAaCUAUAUa -3'
miRNA:   3'- aauUGGAAAAUUGUGGAUUcGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 11035 0.66 1
Target:  5'- gUUAAagggUUAACACUUAAGUUAUAUa -3'
miRNA:   3'- -AAUUggaaAAUUGUGGAUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 11405 0.77 0.997618
Target:  5'- --cACUcUUUAACACUUAAGCUAUAUa -3'
miRNA:   3'- aauUGGaAAAUUGUGGAUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 11492 0.8 0.98162
Target:  5'- --uACUUUUUAAUAUCUAAGCUAUAUa -3'
miRNA:   3'- aauUGGAAAAUUGUGGAUUCGAUAUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.