miRNA display CGI


Results 1 - 20 of 375 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28269 3' -40.6 NC_005902.1 + 184857 0.95 0.437685
Target:  5'- gUUAACCcUUUAACACCUAAGCUGUAUa -3'
miRNA:   3'- -AAUUGGaAAAUUGUGGAUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 184745 0.8 0.98162
Target:  5'- aUUAAUCc--UAACACCUGAGCUAUAUa -3'
miRNA:   3'- -AAUUGGaaaAUUGUGGAUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 184586 0.79 0.992058
Target:  5'- cUUAugC-UUUAACACUUAAGCUAUAUa -3'
miRNA:   3'- -AAUugGaAAAUUGUGGAUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 184369 0.78 0.995103
Target:  5'- uUUAACCUUUUAACACCc--GUUAUAUa -3'
miRNA:   3'- -AAUUGGAAAAUUGUGGauuCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 182934 0.81 0.970391
Target:  5'- -----aUUUUAACACCUAAGCUAUAUa -3'
miRNA:   3'- aauuggAAAAUUGUGGAUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 182559 0.82 0.954938
Target:  5'- --cACUcgaUUUUAACACCUAAGCUAUAUa -3'
miRNA:   3'- aauUGG---AAAAUUGUGGAUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 181225 0.73 0.999968
Target:  5'- -cAGCC-UUUAACuCCUAAGUUAUAUa -3'
miRNA:   3'- aaUUGGaAAAUUGuGGAUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 180879 0.77 0.998397
Target:  5'- aUUAACCcUUUAACAUCUAAGCaAUAUc -3'
miRNA:   3'- -AAUUGGaAAAUUGUGGAUUCGaUAUA- -5'
28269 3' -40.6 NC_005902.1 + 180826 0.69 1
Target:  5'- --uACCU---AACACCUAAGCgAUAUa -3'
miRNA:   3'- aauUGGAaaaUUGUGGAUUCGaUAUA- -5'
28269 3' -40.6 NC_005902.1 + 180616 0.76 0.99933
Target:  5'- uUUAAUUcUUUAACACCUAAGCUuAUAUg -3'
miRNA:   3'- -AAUUGGaAAAUUGUGGAUUCGA-UAUA- -5'
28269 3' -40.6 NC_005902.1 + 180346 0.73 0.99994
Target:  5'- gUUAAUUcUUUAACcCCUAAGCUAUAUa -3'
miRNA:   3'- -AAUUGGaAAAUUGuGGAUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 179806 0.79 0.990762
Target:  5'- gUUAACCcUUUAACAaCUAAGCUAUAUa -3'
miRNA:   3'- -AAUUGGaAAAUUGUgGAUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 179692 0.7 1
Target:  5'- uUUAuCCUUUaaa-ACCUAAGCUAUAUa -3'
miRNA:   3'- -AAUuGGAAAauugUGGAUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 179466 0.66 1
Target:  5'- uUUAAagggUUAACACCUAAGUUAUu- -3'
miRNA:   3'- -AAUUggaaAAUUGUGGAUUCGAUAua -5'
28269 3' -40.6 NC_005902.1 + 178407 0.78 0.995103
Target:  5'- aUUAACCUUUUAAUACUUAAaCUAUAUa -3'
miRNA:   3'- -AAUUGGAAAAUUGUGGAUUcGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 178357 0.71 0.999999
Target:  5'- aUAAUUUUUUuACucuACCUAAGCUAUAUa -3'
miRNA:   3'- aAUUGGAAAAuUG---UGGAUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 177828 0.69 1
Target:  5'- aUUAACUUU-----GCCUAAGCUAUAUa -3'
miRNA:   3'- -AAUUGGAAaauugUGGAUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 177585 0.82 0.954938
Target:  5'- uUUAACCUUUUAACACCUAAaCUAUu- -3'
miRNA:   3'- -AAUUGGAAAAUUGUGGAUUcGAUAua -5'
28269 3' -40.6 NC_005902.1 + 177323 0.66 1
Target:  5'- cUAuCC-UUUAACACCUAAGUuuauuUGUAUa -3'
miRNA:   3'- aAUuGGaAAAUUGUGGAUUCG-----AUAUA- -5'
28269 3' -40.6 NC_005902.1 + 175934 0.66 1
Target:  5'- aUUAACCcUUUAACuCCUAAGgUAUc- -3'
miRNA:   3'- -AAUUGGaAAAUUGuGGAUUCgAUAua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.