miRNA display CGI


Results 41 - 60 of 375 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28269 3' -40.6 NC_005902.1 + 29208 0.91 0.63932
Target:  5'- uUUAACUcUUUAACACCUAAGCUAUAUa -3'
miRNA:   3'- -AAUUGGaAAAUUGUGGAUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 135808 0.91 0.63932
Target:  5'- gUUAGCUcUUUAACACCUAAGCUAUAUa -3'
miRNA:   3'- -AAUUGGaAAAUUGUGGAUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 15145 0.91 0.63932
Target:  5'- cUUAACCUUUUAACAUgUAAGCUAUAUa -3'
miRNA:   3'- -AAUUGGAAAAUUGUGgAUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 170696 0.91 0.63932
Target:  5'- uUUAACUcUUUAACACCUAAGCUAUAUa -3'
miRNA:   3'- -AAUUGGaAAAUUGUGGAUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 15419 0.91 0.63932
Target:  5'- uUUAACUcUUUAACACCUAAGCUAUAUa -3'
miRNA:   3'- -AAUUGGaAAAUUGUGGAUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 39092 0.91 0.63932
Target:  5'- uUUAACUcUUUAACACCUAAGCUAUAUa -3'
miRNA:   3'- -AAUUGGaAAAUUGUGGAUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 93834 0.91 0.650997
Target:  5'- uUUAACCaUUUAAUACCUAAGCUAUAUa -3'
miRNA:   3'- -AAUUGGaAAAUUGUGGAUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 22598 0.9 0.661491
Target:  5'- aUAGCCUUaggauuuaaagggUUAACACCUAAGCUAUAUa -3'
miRNA:   3'- aAUUGGAA-------------AAUUGUGGAUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 49433 0.9 0.662655
Target:  5'- --uACCUUUUAACACCUAAGUUAUAa -3'
miRNA:   3'- aauUGGAAAAUUGUGGAUUCGAUAUa -5'
28269 3' -40.6 NC_005902.1 + 3070 0.9 0.674281
Target:  5'- aUUAACgaUUUAACACCUAAGCUAUAUa -3'
miRNA:   3'- -AAUUGgaAAAUUGUGGAUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 163382 0.9 0.697385
Target:  5'- uUUAAcCCUUUUAACAUCUAAGCUAUAUa -3'
miRNA:   3'- -AAUU-GGAAAAUUGUGGAUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 137432 0.89 0.708836
Target:  5'- --cACCUUUUAACAUCUAAGCUAUAc -3'
miRNA:   3'- aauUGGAAAAUUGUGGAUUCGAUAUa -5'
28269 3' -40.6 NC_005902.1 + 170528 0.89 0.708836
Target:  5'- aUUAACCUUUUAACACCUAAaCUAUAUa -3'
miRNA:   3'- -AAUUGGAAAAUUGUGGAUUcGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 51668 0.89 0.708836
Target:  5'- uUUAAcCCUUUUAACACUUAAGCUAUAUa -3'
miRNA:   3'- -AAUU-GGAAAAUUGUGGAUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 48375 0.89 0.708836
Target:  5'- gUUAACCcUUUAACACCUAAGUUAUGUa -3'
miRNA:   3'- -AAUUGGaAAAUUGUGGAUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 34810 0.89 0.708836
Target:  5'- gUUAACCcUUUAACACCUAAGUUAUAUa -3'
miRNA:   3'- -AAUUGGaAAAUUGUGGAUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 88560 0.89 0.708836
Target:  5'- uUUAACCcUUUAACACCUAAGUUAUAUa -3'
miRNA:   3'- -AAUUGGaAAAUUGUGGAUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 71192 0.89 0.708836
Target:  5'- uUUAACCuUUUUAACACUUAAGCUAUAUa -3'
miRNA:   3'- -AAUUGG-AAAAUUGUGGAUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 117725 0.89 0.720203
Target:  5'- aUUAACCcUUUAACAUCUAAGCUAUAUg -3'
miRNA:   3'- -AAUUGGaAAAUUGUGGAUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 137427 0.89 0.720203
Target:  5'- uUUAACCUUUUAACACCUAAaCUAUAUa -3'
miRNA:   3'- -AAUUGGAAAAUUGUGGAUUcGAUAUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.