miRNA display CGI


Results 41 - 60 of 375 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28269 3' -40.6 NC_005902.1 + 23252 0.96 0.427472
Target:  5'- aUUAACCcUUUAACACCUAAGCUAUAUa -3'
miRNA:   3'- -AAUUGGaAAAUUGUGGAUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 23283 0.84 0.902606
Target:  5'- aUUAAUCcUUUAAUACCUAAGCUAUAUa -3'
miRNA:   3'- -AAUUGGaAAAUUGUGGAUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 23313 0.68 1
Target:  5'- --------aUAACAUCUAAGCUAUAUg -3'
miRNA:   3'- aauuggaaaAUUGUGGAUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 23406 0.67 1
Target:  5'- gUUAAagggUUAACACCcAAGCUAUAUa -3'
miRNA:   3'- -AAUUggaaAAUUGUGGaUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 23461 0.79 0.990762
Target:  5'- gUUAGCCcUUUAACACCUAAuCUAUAUa -3'
miRNA:   3'- -AAUUGGaAAAUUGUGGAUUcGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 23606 0.81 0.97357
Target:  5'- --uACUcUUUAACACCUAAGCUAUAc -3'
miRNA:   3'- aauUGGaAAAUUGUGGAUUCGAUAUa -5'
28269 3' -40.6 NC_005902.1 + 23819 0.73 0.999967
Target:  5'- aUUAACUUuucaacaUUUAACAUUUAAGCUAUAUa -3'
miRNA:   3'- -AAUUGGA-------AAAUUGUGGAUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 23974 0.66 1
Target:  5'- uUUAAUCcUUUAACAUCUAAaCUAUAUa -3'
miRNA:   3'- -AAUUGGaAAAUUGUGGAUUcGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 26487 0.66 1
Target:  5'- gUUAAUCU--UAACAUCUAAacuGCUAUAUa -3'
miRNA:   3'- -AAUUGGAaaAUUGUGGAUU---CGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 26884 0.68 1
Target:  5'- --uACCUUUU-AUGCCUGGuGCUAUGUg -3'
miRNA:   3'- aauUGGAAAAuUGUGGAUU-CGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 27646 0.69 1
Target:  5'- --uGCCUUaggaguuaaagaaUUAAUACCUAGGCUGc-- -3'
miRNA:   3'- aauUGGAA-------------AAUUGUGGAUUCGAUaua -5'
28269 3' -40.6 NC_005902.1 + 27875 0.71 0.999996
Target:  5'- uUUAAagggUUAAUGCCUAAGCUAUAUa -3'
miRNA:   3'- -AAUUggaaAAUUGUGGAUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 28152 0.92 0.604291
Target:  5'- --uAUCUUUUAACACCUAAGCUAUAUa -3'
miRNA:   3'- aauUGGAAAAUUGUGGAUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 28818 0.74 0.999788
Target:  5'- aUAGCUUagguguuaaagggUUAAUACCUAAGCUAUAUa -3'
miRNA:   3'- aAUUGGAa------------AAUUGUGGAUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 28968 0.83 0.934772
Target:  5'- aUAGCUUaggugUUAACACCUAAGCUAUAc -3'
miRNA:   3'- aAUUGGAa----AAUUGUGGAUUCGAUAUa -5'
28269 3' -40.6 NC_005902.1 + 29085 0.72 0.999995
Target:  5'- gUUAAUCcUUUAAUAUUUAAGCUAUAUa -3'
miRNA:   3'- -AAUUGGaAAAUUGUGGAUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 29208 0.91 0.63932
Target:  5'- uUUAACUcUUUAACACCUAAGCUAUAUa -3'
miRNA:   3'- -AAUUGGaAAAUUGUGGAUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 29564 0.77 0.99804
Target:  5'- aUUAACUUUUUAAUAUCcAAGCUAUAUa -3'
miRNA:   3'- -AAUUGGAAAAUUGUGGaUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 29608 0.75 0.999471
Target:  5'- --uACCcUUUAACAUUUAAGCUAUAUa -3'
miRNA:   3'- aauUGGaAAAUUGUGGAUUCGAUAUA- -5'
28269 3' -40.6 NC_005902.1 + 30793 0.89 0.731471
Target:  5'- uUUAACCcUUUAACAUCUAAGCUAUAUa -3'
miRNA:   3'- -AAUUGGaAAAUUGUGGAUUCGAUAUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.