Results 61 - 80 of 239 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28269 | 5' | -43.2 | NC_005902.1 | + | 75853 | 0.71 | 0.999803 |
Target: 5'- uGUAUAUAGUUcAGGUaUUAAAGGGu- -3' miRNA: 3'- -CAUAUAUCGAaUCCAcAAUUUCCCuc -5' |
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28269 | 5' | -43.2 | NC_005902.1 | + | 78240 | 0.71 | 0.999803 |
Target: 5'- aGUAUAUAGCUUAGaUGUUAAAGa--- -3' miRNA: 3'- -CAUAUAUCGAAUCcACAAUUUCccuc -5' |
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28269 | 5' | -43.2 | NC_005902.1 | + | 130915 | 0.71 | 0.999803 |
Target: 5'- --uUAUAGCUUAGGauUUAAAGGGu- -3' miRNA: 3'- cauAUAUCGAAUCCacAAUUUCCCuc -5' |
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28269 | 5' | -43.2 | NC_005902.1 | + | 114843 | 0.72 | 0.999746 |
Target: 5'- uGUAUAUAGCUUAaGUGUuaaaaagguUAAAGGGu- -3' miRNA: 3'- -CAUAUAUCGAAUcCACA---------AUUUCCCuc -5' |
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28269 | 5' | -43.2 | NC_005902.1 | + | 69098 | 0.72 | 0.999746 |
Target: 5'- uUAUAUAaCcUAGGUGUUAAAGGGu- -3' miRNA: 3'- cAUAUAUcGaAUCCACAAUUUCCCuc -5' |
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28269 | 5' | -43.2 | NC_005902.1 | + | 107830 | 0.72 | 0.999746 |
Target: 5'- cGUAUAUAGCUUAGaUGUUAAAGa--- -3' miRNA: 3'- -CAUAUAUCGAAUCcACAAUUUCccuc -5' |
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28269 | 5' | -43.2 | NC_005902.1 | + | 130971 | 0.72 | 0.999746 |
Target: 5'- uUAUAUAcaagugaaCUUAGGUGUUAAAGGGu- -3' miRNA: 3'- cAUAUAUc-------GAAUCCACAAUUUCCCuc -5' |
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28269 | 5' | -43.2 | NC_005902.1 | + | 5216 | 0.72 | 0.999674 |
Target: 5'- aGUAUAUcGCUUAGGUGUU--AGGuAGa -3' miRNA: 3'- -CAUAUAuCGAAUCCACAAuuUCCcUC- -5' |
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28269 | 5' | -43.2 | NC_005902.1 | + | 12863 | 0.72 | 0.999586 |
Target: 5'- uGUAUAUAaCUUAGGaGUUAAGGGGu- -3' miRNA: 3'- -CAUAUAUcGAAUCCaCAAUUUCCCuc -5' |
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28269 | 5' | -43.2 | NC_005902.1 | + | 85940 | 0.72 | 0.999586 |
Target: 5'- -aAUAUAGCUUAGGUGUUAAu----- -3' miRNA: 3'- caUAUAUCGAAUCCACAAUUucccuc -5' |
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28269 | 5' | -43.2 | NC_005902.1 | + | 16600 | 0.72 | 0.999586 |
Target: 5'- aUAUAcAGCUUAaGUGUUAAAGGGu- -3' miRNA: 3'- cAUAUaUCGAAUcCACAAUUUCCCuc -5' |
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28269 | 5' | -43.2 | NC_005902.1 | + | 97749 | 0.72 | 0.999586 |
Target: 5'- -cAUAUAGCUUAGGUGUUAAu----- -3' miRNA: 3'- caUAUAUCGAAUCCACAAUUucccuc -5' |
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28269 | 5' | -43.2 | NC_005902.1 | + | 100020 | 0.72 | 0.999586 |
Target: 5'- -aAUAUAGCUUAGGUGUUAAu----- -3' miRNA: 3'- caUAUAUCGAAUCCACAAUUucccuc -5' |
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28269 | 5' | -43.2 | NC_005902.1 | + | 55158 | 0.72 | 0.999476 |
Target: 5'- uGUAUAUAGCUUGaGaGUUAAAGGGu- -3' miRNA: 3'- -CAUAUAUCGAAUcCaCAAUUUCCCuc -5' |
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28269 | 5' | -43.2 | NC_005902.1 | + | 114290 | 0.72 | 0.999476 |
Target: 5'- aGUAUGUAGUgUAGGUGUUAAAaGGu- -3' miRNA: 3'- -CAUAUAUCGaAUCCACAAUUUcCCuc -5' |
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28269 | 5' | -43.2 | NC_005902.1 | + | 136282 | 0.72 | 0.999476 |
Target: 5'- aUAUAUAGUUUAGGUGUUGAGauGAa -3' miRNA: 3'- cAUAUAUCGAAUCCACAAUUUccCUc -5' |
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28269 | 5' | -43.2 | NC_005902.1 | + | 149879 | 0.73 | 0.999343 |
Target: 5'- aUAUAUAGCUUAGaUGUUaAAAGGGu- -3' miRNA: 3'- cAUAUAUCGAAUCcACAA-UUUCCCuc -5' |
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28269 | 5' | -43.2 | NC_005902.1 | + | 153066 | 0.73 | 0.999343 |
Target: 5'- aGUAUAUAGUUUAGGUGUUAAc----- -3' miRNA: 3'- -CAUAUAUCGAAUCCACAAUUucccuc -5' |
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28269 | 5' | -43.2 | NC_005902.1 | + | 22655 | 0.73 | 0.999343 |
Target: 5'- aUAUAUAGCUUAGaUGUUaAAAGGGu- -3' miRNA: 3'- cAUAUAUCGAAUCcACAA-UUUCCCuc -5' |
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28269 | 5' | -43.2 | NC_005902.1 | + | 104120 | 0.73 | 0.999343 |
Target: 5'- ---cAUGGCUUAGaUGUUAAAGGGu- -3' miRNA: 3'- cauaUAUCGAAUCcACAAUUUCCCuc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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