miRNA display CGI


Results 41 - 60 of 239 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28269 5' -43.2 NC_005902.1 + 162063 0.7 0.999981
Target:  5'- uUAUAUAGUUUAGaUGUUAAAGGa-- -3'
miRNA:   3'- cAUAUAUCGAAUCcACAAUUUCCcuc -5'
28269 5' -43.2 NC_005902.1 + 173217 0.7 0.999981
Target:  5'- aUAUAUAaCUUAGGaGUUAAAGGGu- -3'
miRNA:   3'- cAUAUAUcGAAUCCaCAAUUUCCCuc -5'
28269 5' -43.2 NC_005902.1 + 149242 0.7 0.999974
Target:  5'- uGUGUAUAGCUUAaGUGUUAAAaGGu- -3'
miRNA:   3'- -CAUAUAUCGAAUcCACAAUUUcCCuc -5'
28269 5' -43.2 NC_005902.1 + 67393 0.7 0.999974
Target:  5'- uGUAUAUAGCUUAaGUGUUAAAaGGu- -3'
miRNA:   3'- -CAUAUAUCGAAUcCACAAUUUcCCuc -5'
28269 5' -43.2 NC_005902.1 + 117107 0.7 0.999974
Target:  5'- uGUAUAUAGCUUAaGUGUUAAAaGGu- -3'
miRNA:   3'- -CAUAUAUCGAAUcCACAAUUUcCCuc -5'
28269 5' -43.2 NC_005902.1 + 90096 0.7 0.999965
Target:  5'- aGUAUAUAaCUUAaGUGUUAAAGGGu- -3'
miRNA:   3'- -CAUAUAUcGAAUcCACAAUUUCCCuc -5'
28269 5' -43.2 NC_005902.1 + 177627 0.7 0.999965
Target:  5'- uGUAUAUAGUUUAGGUGUaaAAAGuGAa -3'
miRNA:   3'- -CAUAUAUCGAAUCCACAa-UUUCcCUc -5'
28269 5' -43.2 NC_005902.1 + 1452 0.7 0.999965
Target:  5'- aGUAUAUAGCUUAaGUGUUAAAGc--- -3'
miRNA:   3'- -CAUAUAUCGAAUcCACAAUUUCccuc -5'
28269 5' -43.2 NC_005902.1 + 164731 0.7 0.999965
Target:  5'- aGUAUAUAGCUUAGaUGUUAAAaGGu- -3'
miRNA:   3'- -CAUAUAUCGAAUCcACAAUUUcCCuc -5'
28269 5' -43.2 NC_005902.1 + 67748 0.7 0.999952
Target:  5'- aGUAUAUAGCUUAaGUGUUAAAaGGu- -3'
miRNA:   3'- -CAUAUAUCGAAUcCACAAUUUcCCuc -5'
28269 5' -43.2 NC_005902.1 + 42400 0.7 0.999952
Target:  5'- aGUAUAUAGCUUAGGUGUc-------- -3'
miRNA:   3'- -CAUAUAUCGAAUCCACAauuucccuc -5'
28269 5' -43.2 NC_005902.1 + 90636 0.71 0.999935
Target:  5'- aUAUAUAaUUUAGGUGUUAAAGGa-- -3'
miRNA:   3'- cAUAUAUcGAAUCCACAAUUUCCcuc -5'
28269 5' -43.2 NC_005902.1 + 40997 0.71 0.999913
Target:  5'- -cAUAUAGCUUAGGUGcUAAAGa--- -3'
miRNA:   3'- caUAUAUCGAAUCCACaAUUUCccuc -5'
28269 5' -43.2 NC_005902.1 + 39451 0.71 0.999913
Target:  5'- aGUAUAUAGCUUAGaUGUUAGAauGGAu -3'
miRNA:   3'- -CAUAUAUCGAAUCcACAAUUUc-CCUc -5'
28269 5' -43.2 NC_005902.1 + 118683 0.71 0.999885
Target:  5'- aUAUAUAGUUaGGG-GUUAAAGGGu- -3'
miRNA:   3'- cAUAUAUCGAaUCCaCAAUUUCCCuc -5'
28269 5' -43.2 NC_005902.1 + 19914 0.71 0.999885
Target:  5'- uGUAUAUAGCUUAaGUaUUAAAGGGu- -3'
miRNA:   3'- -CAUAUAUCGAAUcCAcAAUUUCCCuc -5'
28269 5' -43.2 NC_005902.1 + 92202 0.71 0.999885
Target:  5'- uGUAUAUAGCUUAGGUaUUAAAuGGu- -3'
miRNA:   3'- -CAUAUAUCGAAUCCAcAAUUUcCCuc -5'
28269 5' -43.2 NC_005902.1 + 116817 0.71 0.999849
Target:  5'- -aGUAUA-CUUAGGUGUUAAAGGu-- -3'
miRNA:   3'- caUAUAUcGAAUCCACAAUUUCCcuc -5'
28269 5' -43.2 NC_005902.1 + 99599 0.71 0.999849
Target:  5'- uGUAUAUAGCUUAaGUGUUAAAGa--- -3'
miRNA:   3'- -CAUAUAUCGAAUcCACAAUUUCccuc -5'
28269 5' -43.2 NC_005902.1 + 78240 0.71 0.999803
Target:  5'- aGUAUAUAGCUUAGaUGUUAAAGa--- -3'
miRNA:   3'- -CAUAUAUCGAAUCcACAAUUUCccuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.