miRNA display CGI


Results 41 - 60 of 239 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28269 5' -43.2 NC_005902.1 + 52367 0.86 0.702619
Target:  5'- uGUAUAUAGCUUAGGUGUUAAAGa--- -3'
miRNA:   3'- -CAUAUAUCGAAUCCACAAUUUCccuc -5'
28269 5' -43.2 NC_005902.1 + 146944 0.86 0.702619
Target:  5'- uGUAUAUAGCUUAGGUGUUAAAGa--- -3'
miRNA:   3'- -CAUAUAUCGAAUCCACAAUUUCccuc -5'
28269 5' -43.2 NC_005902.1 + 105307 0.86 0.702619
Target:  5'- uGUAUAUAGCUUAGGUGUUAAAGa--- -3'
miRNA:   3'- -CAUAUAUCGAAUCCACAAUUUCccuc -5'
28269 5' -43.2 NC_005902.1 + 131155 0.86 0.713577
Target:  5'- uGUAUAUAGCUUAGGUaUUAAAGGGu- -3'
miRNA:   3'- -CAUAUAUCGAAUCCAcAAUUUCCCuc -5'
28269 5' -43.2 NC_005902.1 + 154625 0.86 0.713577
Target:  5'- uGUAUAUAGCUUAGGUaUUAAAGGGu- -3'
miRNA:   3'- -CAUAUAUCGAAUCCAcAAUUUCCCuc -5'
28269 5' -43.2 NC_005902.1 + 167185 0.86 0.735231
Target:  5'- cGUAUAUAGCUUAGGUGUUAAAaGGu- -3'
miRNA:   3'- -CAUAUAUCGAAUCCACAAUUUcCCuc -5'
28269 5' -43.2 NC_005902.1 + 87103 0.86 0.735231
Target:  5'- uUAUAUAGCUUAGGgGUUAAAGGGu- -3'
miRNA:   3'- cAUAUAUCGAAUCCaCAAUUUCCCuc -5'
28269 5' -43.2 NC_005902.1 + 13436 0.85 0.745902
Target:  5'- aGUAUAUAGCUUAaGUGUUAAAGGGu- -3'
miRNA:   3'- -CAUAUAUCGAAUcCACAAUUUCCCuc -5'
28269 5' -43.2 NC_005902.1 + 140962 0.85 0.745902
Target:  5'- aGUAUAUAGCUUAGGUGUUAAAaGGu- -3'
miRNA:   3'- -CAUAUAUCGAAUCCACAAUUUcCCuc -5'
28269 5' -43.2 NC_005902.1 + 155244 0.85 0.745902
Target:  5'- cGUAUAUAGCUUAGaUGUUAAAGGGu- -3'
miRNA:   3'- -CAUAUAUCGAAUCcACAAUUUCCCuc -5'
28269 5' -43.2 NC_005902.1 + 39618 0.85 0.756454
Target:  5'- --uUAUAGCUUAGGUGUUAAAGGa-- -3'
miRNA:   3'- cauAUAUCGAAUCCACAAUUUCCcuc -5'
28269 5' -43.2 NC_005902.1 + 65798 0.85 0.756454
Target:  5'- -cAUAUAGCUcAGGUGUUAAAGGGu- -3'
miRNA:   3'- caUAUAUCGAaUCCACAAUUUCCCuc -5'
28269 5' -43.2 NC_005902.1 + 6230 0.85 0.756454
Target:  5'- aGUAUAUAGCUUAGuUGUUAAAGGGu- -3'
miRNA:   3'- -CAUAUAUCGAAUCcACAAUUUCCCuc -5'
28269 5' -43.2 NC_005902.1 + 151227 0.85 0.756454
Target:  5'- aGUAUAUAaCUUAGGUGUUAAAGGGu- -3'
miRNA:   3'- -CAUAUAUcGAAUCCACAAUUUCCCuc -5'
28269 5' -43.2 NC_005902.1 + 49473 0.85 0.756454
Target:  5'- aGUAUAUAaCUUAGGUGUUAAAGGGu- -3'
miRNA:   3'- -CAUAUAUcGAAUCCACAAUUUCCCuc -5'
28269 5' -43.2 NC_005902.1 + 43022 0.85 0.756454
Target:  5'- aGUAUAUAGCUUAGaUGUUAAAGGGu- -3'
miRNA:   3'- -CAUAUAUCGAAUCcACAAUUUCCCuc -5'
28269 5' -43.2 NC_005902.1 + 40095 0.85 0.756454
Target:  5'- aGUAUAUAGCUUAGaUGUUAAAGGGu- -3'
miRNA:   3'- -CAUAUAUCGAAUCcACAAUUUCCCuc -5'
28269 5' -43.2 NC_005902.1 + 80098 0.85 0.766874
Target:  5'- uGUAUAUAGCUUAGGUGUUAAAaGGu- -3'
miRNA:   3'- -CAUAUAUCGAAUCCACAAUUUcCCuc -5'
28269 5' -43.2 NC_005902.1 + 100136 0.85 0.766874
Target:  5'- aUAUAUAGCUUAGaUGUUAAAGGGGu -3'
miRNA:   3'- cAUAUAUCGAAUCcACAAUUUCCCUc -5'
28269 5' -43.2 NC_005902.1 + 23507 0.85 0.766874
Target:  5'- uGUAUAUAGCUUAaGUGUUAAAGGGu- -3'
miRNA:   3'- -CAUAUAUCGAAUcCACAAUUUCCCuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.