miRNA display CGI


Results 21 - 40 of 239 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28269 5' -43.2 NC_005902.1 + 88607 0.95 0.324643
Target:  5'- -aGUAUAGCUUAGGUGUUAAAGGGu- -3'
miRNA:   3'- caUAUAUCGAAUCCACAAUUUCCCuc -5'
28269 5' -43.2 NC_005902.1 + 114438 0.94 0.341106
Target:  5'- aGUAUAUAGCUUAGGUGUUAAAGGa-- -3'
miRNA:   3'- -CAUAUAUCGAAUCCACAAUUUCCcuc -5'
28269 5' -43.2 NC_005902.1 + 39307 0.94 0.358164
Target:  5'- uGUAUAUAGCUUAGGUGUUAAAGGa-- -3'
miRNA:   3'- -CAUAUAUCGAAUCCACAAUUUCCcuc -5'
28269 5' -43.2 NC_005902.1 + 164874 0.92 0.442017
Target:  5'- aUAUAUAGCUUAaGUGUUAAAGGGAGu -3'
miRNA:   3'- cAUAUAUCGAAUcCACAAUUUCCCUC- -5'
28269 5' -43.2 NC_005902.1 + 131991 0.91 0.493131
Target:  5'- aUAUAUAGCUUAGGUGUUAAAGGa-- -3'
miRNA:   3'- cAUAUAUCGAAUCCACAAUUUCCcuc -5'
28269 5' -43.2 NC_005902.1 + 71498 0.9 0.503682
Target:  5'- uUAUAUAGCcUAGGUGUUAAAGGGGu -3'
miRNA:   3'- cAUAUAUCGaAUCCACAAUUUCCCUc -5'
28269 5' -43.2 NC_005902.1 + 122804 0.9 0.54679
Target:  5'- aGUAUAUAGCUUAGGgGUUAAAGGGu- -3'
miRNA:   3'- -CAUAUAUCGAAUCCaCAAUUUCCCuc -5'
28269 5' -43.2 NC_005902.1 + 67032 0.89 0.591002
Target:  5'- aGUAUAUAGCUUAGGaGUUAAAGGGu- -3'
miRNA:   3'- -CAUAUAUCGAAUCCaCAAUUUCCCuc -5'
28269 5' -43.2 NC_005902.1 + 145073 0.89 0.591002
Target:  5'- uGUAUAUAGCUUAGGUaUUAAAGGGuGa -3'
miRNA:   3'- -CAUAUAUCGAAUCCAcAAUUUCCCuC- -5'
28269 5' -43.2 NC_005902.1 + 136001 0.89 0.591002
Target:  5'- ---cAUAGCUUAGGUGUUAAAGGGu- -3'
miRNA:   3'- cauaUAUCGAAUCCACAAUUUCCCuc -5'
28269 5' -43.2 NC_005902.1 + 49995 0.89 0.591002
Target:  5'- aGUAUAUAGCUUAGGaGUUAAAGGGu- -3'
miRNA:   3'- -CAUAUAUCGAAUCCaCAAUUUCCCuc -5'
28269 5' -43.2 NC_005902.1 + 169167 0.88 0.602167
Target:  5'- -gAUAUAGCUUAGGUGUUAAAGGa-- -3'
miRNA:   3'- caUAUAUCGAAUCCACAAUUUCCcuc -5'
28269 5' -43.2 NC_005902.1 + 135930 0.88 0.613358
Target:  5'- aGUAUGUAGCUUAGGUGUUAggaucaAAGGGu- -3'
miRNA:   3'- -CAUAUAUCGAAUCCACAAU------UUCCCuc -5'
28269 5' -43.2 NC_005902.1 + 136088 0.88 0.613358
Target:  5'- uGUAUAUAGCUUAGGaGUUAAAGGGu- -3'
miRNA:   3'- -CAUAUAUCGAAUCCaCAAUUUCCCuc -5'
28269 5' -43.2 NC_005902.1 + 87406 0.88 0.624567
Target:  5'- uGUAUAUAGCUUAGGUa-UGAAGGGGGu -3'
miRNA:   3'- -CAUAUAUCGAAUCCAcaAUUUCCCUC- -5'
28269 5' -43.2 NC_005902.1 + 29494 0.88 0.624567
Target:  5'- aUAUAUAGCUUAGGUGUUaAAAGGGu- -3'
miRNA:   3'- cAUAUAUCGAAUCCACAA-UUUCCCuc -5'
28269 5' -43.2 NC_005902.1 + 1178 0.87 0.658192
Target:  5'- aUAUAUacAGCUUAGGUGUUAAAGGGu- -3'
miRNA:   3'- cAUAUA--UCGAAUCCACAAUUUCCCuc -5'
28269 5' -43.2 NC_005902.1 + 43887 0.87 0.680501
Target:  5'- aGUAUAUAGCUUAGGUGUUAAAGa--- -3'
miRNA:   3'- -CAUAUAUCGAAUCCACAAUUUCccuc -5'
28269 5' -43.2 NC_005902.1 + 105307 0.86 0.702619
Target:  5'- uGUAUAUAGCUUAGGUGUUAAAGa--- -3'
miRNA:   3'- -CAUAUAUCGAAUCCACAAUUUCccuc -5'
28269 5' -43.2 NC_005902.1 + 146944 0.86 0.702619
Target:  5'- uGUAUAUAGCUUAGGUGUUAAAGa--- -3'
miRNA:   3'- -CAUAUAUCGAAUCCACAAUUUCccuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.