miRNA display CGI


Results 21 - 40 of 239 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28269 5' -43.2 NC_005902.1 + 16531 0.74 0.997764
Target:  5'- aUAUAUAGCUcAGGUGUUAAAGa--- -3'
miRNA:   3'- cAUAUAUCGAaUCCACAAUUUCccuc -5'
28269 5' -43.2 NC_005902.1 + 16600 0.72 0.999586
Target:  5'- aUAUAcAGCUUAaGUGUUAAAGGGu- -3'
miRNA:   3'- cAUAUaUCGAAUcCACAAUUUCCCuc -5'
28269 5' -43.2 NC_005902.1 + 16919 0.97 0.26476
Target:  5'- aUAUAUAGCUUAGGUGUUAAAGGGu- -3'
miRNA:   3'- cAUAUAUCGAAUCCACAAUUUCCCuc -5'
28269 5' -43.2 NC_005902.1 + 18886 1.12 0.041504
Target:  5'- aGUAUAUAGCUUAGGUGUUAAAGGGAGa -3'
miRNA:   3'- -CAUAUAUCGAAUCCACAAUUUCCCUC- -5'
28269 5' -43.2 NC_005902.1 + 19914 0.71 0.999885
Target:  5'- uGUAUAUAGCUUAaGUaUUAAAGGGu- -3'
miRNA:   3'- -CAUAUAUCGAAUcCAcAAUUUCCCuc -5'
28269 5' -43.2 NC_005902.1 + 20153 1.01 0.167365
Target:  5'- cGUAUAUAGCUUAGGUGUUAAAGGGu- -3'
miRNA:   3'- -CAUAUAUCGAAUCCACAAUUUCCCuc -5'
28269 5' -43.2 NC_005902.1 + 20325 0.75 0.9947
Target:  5'- aUAUAUAGCUUAGGUGUUAAua-GAu -3'
miRNA:   3'- cAUAUAUCGAAUCCACAAUUuccCUc -5'
28269 5' -43.2 NC_005902.1 + 22594 0.68 0.999999
Target:  5'- uUAUAUAGcCUUAGGauUUAAAGGGu- -3'
miRNA:   3'- cAUAUAUC-GAAUCCacAAUUUCCCuc -5'
28269 5' -43.2 NC_005902.1 + 22655 0.73 0.999343
Target:  5'- aUAUAUAGCUUAGaUGUUaAAAGGGu- -3'
miRNA:   3'- cAUAUAUCGAAUCcACAA-UUUCCCuc -5'
28269 5' -43.2 NC_005902.1 + 23290 0.77 0.983524
Target:  5'- -cAUAUAGCUUAaaUGUUAAAGGGAu -3'
miRNA:   3'- caUAUAUCGAAUccACAAUUUCCCUc -5'
28269 5' -43.2 NC_005902.1 + 23507 0.85 0.766874
Target:  5'- uGUAUAUAGCUUAaGUGUUAAAGGGu- -3'
miRNA:   3'- -CAUAUAUCGAAUcCACAAUUUCCCuc -5'
28269 5' -43.2 NC_005902.1 + 23652 1.06 0.081918
Target:  5'- aGUAUGUAGCUUAGGUGUUAAAGGGAa -3'
miRNA:   3'- -CAUAUAUCGAAUCCACAAUUUCCCUc -5'
28269 5' -43.2 NC_005902.1 + 25161 0.69 0.999987
Target:  5'- aGUAUAUAGCUUAGGgGUUAAAu---- -3'
miRNA:   3'- -CAUAUAUCGAAUCCaCAAUUUcccuc -5'
28269 5' -43.2 NC_005902.1 + 26531 0.68 0.999999
Target:  5'- aGUAUAuaaUAGCUUAaaUGUUAAAGGGu- -3'
miRNA:   3'- -CAUAU---AUCGAAUccACAAUUUCCCuc -5'
28269 5' -43.2 NC_005902.1 + 27813 0.79 0.955869
Target:  5'- uGUAUAUAGCUUAGGcaUUAAAGGGu- -3'
miRNA:   3'- -CAUAUAUCGAAUCCacAAUUUCCCuc -5'
28269 5' -43.2 NC_005902.1 + 28192 0.77 0.987273
Target:  5'- aUAUAUAGCUUAGGUGUUAAAu---- -3'
miRNA:   3'- cAUAUAUCGAAUCCACAAUUUcccuc -5'
28269 5' -43.2 NC_005902.1 + 28813 1 0.181845
Target:  5'- uGUAUAUAGCUUAGGUGUUAAAGGGu- -3'
miRNA:   3'- -CAUAUAUCGAAUCCACAAUUUCCCuc -5'
28269 5' -43.2 NC_005902.1 + 28964 0.74 0.997764
Target:  5'- cUGUAUAGCUUAGGUGUUAAc----- -3'
miRNA:   3'- cAUAUAUCGAAUCCACAAUUucccuc -5'
28269 5' -43.2 NC_005902.1 + 29135 0.77 0.981362
Target:  5'- aUAUAUAGUUUAGGUaUUAAAGGGu- -3'
miRNA:   3'- cAUAUAUCGAAUCCAcAAUUUCCCuc -5'
28269 5' -43.2 NC_005902.1 + 29255 0.82 0.885186
Target:  5'- aGUAUAUAGCUUAGGUGUUA---GGAu -3'
miRNA:   3'- -CAUAUAUCGAAUCCACAAUuucCCUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.