miRNA display CGI


Results 21 - 40 of 239 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28269 5' -43.2 NC_005902.1 + 165757 0.73 0.998987
Target:  5'- aGUAUAUGuuaaCUUAGGUGUUAAAGGa-- -3'
miRNA:   3'- -CAUAUAUc---GAAUCCACAAUUUCCcuc -5'
28269 5' -43.2 NC_005902.1 + 164874 0.92 0.442017
Target:  5'- aUAUAUAGCUUAaGUGUUAAAGGGAGu -3'
miRNA:   3'- cAUAUAUCGAAUcCACAAUUUCCCUC- -5'
28269 5' -43.2 NC_005902.1 + 164731 0.7 0.999965
Target:  5'- aGUAUAUAGCUUAGaUGUUAAAaGGu- -3'
miRNA:   3'- -CAUAUAUCGAAUCcACAAUUUcCCuc -5'
28269 5' -43.2 NC_005902.1 + 163428 0.75 0.995989
Target:  5'- aUAUAUAGCUUAGGUGUUAacccuuuaaauccuAAGGc-- -3'
miRNA:   3'- cAUAUAUCGAAUCCACAAU--------------UUCCcuc -5'
28269 5' -43.2 NC_005902.1 + 162785 0.97 0.26476
Target:  5'- aUAUAUAGCUUAGGUGUUAAAGGGu- -3'
miRNA:   3'- cAUAUAUCGAAUCCACAAUUUCCCuc -5'
28269 5' -43.2 NC_005902.1 + 162754 0.77 0.985491
Target:  5'- aUAUAUAGCUUAGGUaUUAAAGGa-- -3'
miRNA:   3'- cAUAUAUCGAAUCCAcAAUUUCCcuc -5'
28269 5' -43.2 NC_005902.1 + 162631 0.77 0.983524
Target:  5'- uGUAUAUAGCUUGGGUGUUAAc----- -3'
miRNA:   3'- -CAUAUAUCGAAUCCACAAUUucccuc -5'
28269 5' -43.2 NC_005902.1 + 162576 0.85 0.77715
Target:  5'- aGUAUAUAGaUUAGGUGUUAAAGGGc- -3'
miRNA:   3'- -CAUAUAUCgAAUCCACAAUUUCCCuc -5'
28269 5' -43.2 NC_005902.1 + 162434 0.86 0.702619
Target:  5'- uGUGUAUAGCUUAGGUGUUAAAGa--- -3'
miRNA:   3'- -CAUAUAUCGAAUCCACAAUUUCccuc -5'
28269 5' -43.2 NC_005902.1 + 162063 0.7 0.999981
Target:  5'- uUAUAUAGUUUAGaUGUUAAAGGa-- -3'
miRNA:   3'- cAUAUAUCGAAUCcACAAUUUCCcuc -5'
28269 5' -43.2 NC_005902.1 + 157888 0.77 0.985491
Target:  5'- uUAUAUAGCUUAGGUGUUAAAa---- -3'
miRNA:   3'- cAUAUAUCGAAUCCACAAUUUcccuc -5'
28269 5' -43.2 NC_005902.1 + 157065 0.78 0.976411
Target:  5'- uGUGUAUAGCUUAGGUGUUAAc----- -3'
miRNA:   3'- -CAUAUAUCGAAUCCACAAUUucccuc -5'
28269 5' -43.2 NC_005902.1 + 156829 0.83 0.844079
Target:  5'- aUAUAUAGCUUAGGUGUUAAAGa--- -3'
miRNA:   3'- cAUAUAUCGAAUCCACAAUUUCccuc -5'
28269 5' -43.2 NC_005902.1 + 156592 0.76 0.991621
Target:  5'- aUAUAUAaUUUGGGUGUUAAAGGGu- -3'
miRNA:   3'- cAUAUAUcGAAUCCACAAUUUCCCuc -5'
28269 5' -43.2 NC_005902.1 + 156432 0.78 0.976411
Target:  5'- aGUAUAUAGCUUAaaUGUUAAAGGGu- -3'
miRNA:   3'- -CAUAUAUCGAAUccACAAUUUCCCuc -5'
28269 5' -43.2 NC_005902.1 + 155244 0.85 0.745902
Target:  5'- cGUAUAUAGCUUAGaUGUUAAAGGGu- -3'
miRNA:   3'- -CAUAUAUCGAAUCcACAAUUUCCCuc -5'
28269 5' -43.2 NC_005902.1 + 154957 0.76 0.988881
Target:  5'- ---cAUAGCUUGGGUGUUaAAAGGuGAa -3'
miRNA:   3'- cauaUAUCGAAUCCACAA-UUUCC-CUc -5'
28269 5' -43.2 NC_005902.1 + 154625 0.86 0.713577
Target:  5'- uGUAUAUAGCUUAGGUaUUAAAGGGu- -3'
miRNA:   3'- -CAUAUAUCGAAUCCAcAAUUUCCCuc -5'
28269 5' -43.2 NC_005902.1 + 153066 0.73 0.999343
Target:  5'- aGUAUAUAGUUUAGGUGUUAAc----- -3'
miRNA:   3'- -CAUAUAUCGAAUCCACAAUUucccuc -5'
28269 5' -43.2 NC_005902.1 + 151227 0.85 0.756454
Target:  5'- aGUAUAUAaCUUAGGUGUUAAAGGGu- -3'
miRNA:   3'- -CAUAUAUcGAAUCCACAAUUUCCCuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.