miRNA display CGI


Results 21 - 40 of 239 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28269 5' -43.2 NC_005902.1 + 87103 0.86 0.735231
Target:  5'- uUAUAUAGCUUAGGgGUUAAAGGGu- -3'
miRNA:   3'- cAUAUAUCGAAUCCaCAAUUUCCCuc -5'
28269 5' -43.2 NC_005902.1 + 162434 0.86 0.702619
Target:  5'- uGUGUAUAGCUUAGGUGUUAAAGa--- -3'
miRNA:   3'- -CAUAUAUCGAAUCCACAAUUUCccuc -5'
28269 5' -43.2 NC_005902.1 + 39307 0.94 0.358164
Target:  5'- uGUAUAUAGCUUAGGUGUUAAAGGa-- -3'
miRNA:   3'- -CAUAUAUCGAAUCCACAAUUUCCcuc -5'
28269 5' -43.2 NC_005902.1 + 80777 1 0.181845
Target:  5'- gGUAUAUAGCUUAGGUGUUAAAGGGu- -3'
miRNA:   3'- -CAUAUAUCGAAUCCACAAUUUCCCuc -5'
28269 5' -43.2 NC_005902.1 + 165979 0.84 0.797222
Target:  5'- uGUAUAUGGCUUAuGUGUUAAAGGGu- -3'
miRNA:   3'- -CAUAUAUCGAAUcCACAAUUUCCCuc -5'
28269 5' -43.2 NC_005902.1 + 29611 0.85 0.766874
Target:  5'- uGUAUAUAGCUUAGGUGUUAAAaGGu- -3'
miRNA:   3'- -CAUAUAUCGAAUCCACAAUUUcCCuc -5'
28269 5' -43.2 NC_005902.1 + 52367 0.86 0.702619
Target:  5'- uGUAUAUAGCUUAGGUGUUAAAGa--- -3'
miRNA:   3'- -CAUAUAUCGAAUCCACAAUUUCccuc -5'
28269 5' -43.2 NC_005902.1 + 28813 1 0.181845
Target:  5'- uGUAUAUAGCUUAGGUGUUAAAGGGu- -3'
miRNA:   3'- -CAUAUAUCGAAUCCACAAUUUCCCuc -5'
28269 5' -43.2 NC_005902.1 + 23507 0.85 0.766874
Target:  5'- uGUAUAUAGCUUAaGUGUUAAAGGGu- -3'
miRNA:   3'- -CAUAUAUCGAAUcCACAAUUUCCCuc -5'
28269 5' -43.2 NC_005902.1 + 42267 1 0.172073
Target:  5'- aGUAUAUAGCUUAGGUGUUAAAGGGu- -3'
miRNA:   3'- -CAUAUAUCGAAUCCACAAUUUCCCuc -5'
28269 5' -43.2 NC_005902.1 + 99651 0.86 0.702619
Target:  5'- uGUAUAUAGCUUAGGUGUUAAAGa--- -3'
miRNA:   3'- -CAUAUAUCGAAUCCACAAUUUCccuc -5'
28269 5' -43.2 NC_005902.1 + 167185 0.86 0.735231
Target:  5'- cGUAUAUAGCUUAGGUGUUAAAaGGu- -3'
miRNA:   3'- -CAUAUAUCGAAUCCACAAUUUcCCuc -5'
28269 5' -43.2 NC_005902.1 + 136088 0.88 0.613358
Target:  5'- uGUAUAUAGCUUAGGaGUUAAAGGGu- -3'
miRNA:   3'- -CAUAUAUCGAAUCCaCAAUUUCCCuc -5'
28269 5' -43.2 NC_005902.1 + 71498 0.9 0.503682
Target:  5'- uUAUAUAGCcUAGGUGUUAAAGGGGu -3'
miRNA:   3'- cAUAUAUCGaAUCCACAAUUUCCCUc -5'
28269 5' -43.2 NC_005902.1 + 125576 0.97 0.26476
Target:  5'- aUAUAUAGCUUAGGUGUUAAAGGGu- -3'
miRNA:   3'- cAUAUAUCGAAUCCACAAUUUCCCuc -5'
28269 5' -43.2 NC_005902.1 + 13226 0.97 0.26476
Target:  5'- aUAUAUAGCUUAGGUGUUAAAGGGu- -3'
miRNA:   3'- cAUAUAUCGAAUCCACAAUUUCCCuc -5'
28269 5' -43.2 NC_005902.1 + 50229 0.83 0.844079
Target:  5'- aUAUAUAGCUUAGGUGUUAAAGa--- -3'
miRNA:   3'- cAUAUAUCGAAUCCACAAUUUCccuc -5'
28269 5' -43.2 NC_005902.1 + 76246 0.84 0.806996
Target:  5'- aUAUAUAaCUUAGGUGUUAAAGGGuGa -3'
miRNA:   3'- cAUAUAUcGAAUCCACAAUUUCCCuC- -5'
28269 5' -43.2 NC_005902.1 + 97477 0.85 0.77715
Target:  5'- uGUAUAUAaCUUAGGUGUUAAAGGGu- -3'
miRNA:   3'- -CAUAUAUcGAAUCCACAAUUUCCCuc -5'
28269 5' -43.2 NC_005902.1 + 142026 0.85 0.766874
Target:  5'- uGUAUAUAGCUUAGGUGUUAAAaGGu- -3'
miRNA:   3'- -CAUAUAUCGAAUCCACAAUUUcCCuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.