Results 41 - 60 of 239 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28269 | 5' | -43.2 | NC_005902.1 | + | 167292 | 0.85 | 0.77715 |
Target: 5'- uGUAUAUAaCUUAGGUGUUAAAGGGu- -3' miRNA: 3'- -CAUAUAUcGAAUCCACAAUUUCCCuc -5' |
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28269 | 5' | -43.2 | NC_005902.1 | + | 52367 | 0.86 | 0.702619 |
Target: 5'- uGUAUAUAGCUUAGGUGUUAAAGa--- -3' miRNA: 3'- -CAUAUAUCGAAUCCACAAUUUCccuc -5' |
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28269 | 5' | -43.2 | NC_005902.1 | + | 28813 | 1 | 0.181845 |
Target: 5'- uGUAUAUAGCUUAGGUGUUAAAGGGu- -3' miRNA: 3'- -CAUAUAUCGAAUCCACAAUUUCCCuc -5' |
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28269 | 5' | -43.2 | NC_005902.1 | + | 134192 | 0.85 | 0.77715 |
Target: 5'- uGUAUAUAGCUUAGaUGUUAAAGGGu- -3' miRNA: 3'- -CAUAUAUCGAAUCcACAAUUUCCCuc -5' |
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28269 | 5' | -43.2 | NC_005902.1 | + | 42267 | 1 | 0.172073 |
Target: 5'- aGUAUAUAGCUUAGGUGUUAAAGGGu- -3' miRNA: 3'- -CAUAUAUCGAAUCCACAAUUUCCCuc -5' |
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28269 | 5' | -43.2 | NC_005902.1 | + | 156432 | 0.78 | 0.976411 |
Target: 5'- aGUAUAUAGCUUAaaUGUUAAAGGGu- -3' miRNA: 3'- -CAUAUAUCGAAUccACAAUUUCCCuc -5' |
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28269 | 5' | -43.2 | NC_005902.1 | + | 13226 | 0.97 | 0.26476 |
Target: 5'- aUAUAUAGCUUAGGUGUUAAAGGGu- -3' miRNA: 3'- cAUAUAUCGAAUCCACAAUUUCCCuc -5' |
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28269 | 5' | -43.2 | NC_005902.1 | + | 144191 | 0.79 | 0.955869 |
Target: 5'- uGUAUAUAGUUUAGaUGUUAAAGGGu- -3' miRNA: 3'- -CAUAUAUCGAAUCcACAAUUUCCCuc -5' |
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28269 | 5' | -43.2 | NC_005902.1 | + | 169577 | 0.8 | 0.94203 |
Target: 5'- aGUGUAUAGUUUAGGUGUUAAAaGGu- -3' miRNA: 3'- -CAUAUAUCGAAUCCACAAUUUcCCuc -5' |
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28269 | 5' | -43.2 | NC_005902.1 | + | 76684 | 0.82 | 0.892627 |
Target: 5'- aUAUAUAGCUUAaGUGUUAAAGGGu- -3' miRNA: 3'- cAUAUAUCGAAUcCACAAUUUCCCuc -5' |
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28269 | 5' | -43.2 | NC_005902.1 | + | 52206 | 0.82 | 0.877476 |
Target: 5'- gGUAUAUcaCUUAGGUGUUAAAGGGuGa -3' miRNA: 3'- -CAUAUAucGAAUCCACAAUUUCCCuC- -5' |
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28269 | 5' | -43.2 | NC_005902.1 | + | 50229 | 0.83 | 0.844079 |
Target: 5'- aUAUAUAGCUUAGGUGUUAAAGa--- -3' miRNA: 3'- cAUAUAUCGAAUCCACAAUUUCccuc -5' |
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28269 | 5' | -43.2 | NC_005902.1 | + | 76246 | 0.84 | 0.806996 |
Target: 5'- aUAUAUAaCUUAGGUGUUAAAGGGuGa -3' miRNA: 3'- cAUAUAUcGAAUCCACAAUUUCCCuC- -5' |
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28269 | 5' | -43.2 | NC_005902.1 | + | 86056 | 0.85 | 0.766874 |
Target: 5'- aUAUAUAGCUUAGaUGUUAAAGGGGu -3' miRNA: 3'- cAUAUAUCGAAUCcACAAUUUCCCUc -5' |
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28269 | 5' | -43.2 | NC_005902.1 | + | 23507 | 0.85 | 0.766874 |
Target: 5'- uGUAUAUAGCUUAaGUGUUAAAGGGu- -3' miRNA: 3'- -CAUAUAUCGAAUcCACAAUUUCCCuc -5' |
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28269 | 5' | -43.2 | NC_005902.1 | + | 87103 | 0.86 | 0.735231 |
Target: 5'- uUAUAUAGCUUAGGgGUUAAAGGGu- -3' miRNA: 3'- cAUAUAUCGAAUCCaCAAUUUCCCuc -5' |
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28269 | 5' | -43.2 | NC_005902.1 | + | 162434 | 0.86 | 0.702619 |
Target: 5'- uGUGUAUAGCUUAGGUGUUAAAGa--- -3' miRNA: 3'- -CAUAUAUCGAAUCCACAAUUUCccuc -5' |
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28269 | 5' | -43.2 | NC_005902.1 | + | 136088 | 0.88 | 0.613358 |
Target: 5'- uGUAUAUAGCUUAGGaGUUAAAGGGu- -3' miRNA: 3'- -CAUAUAUCGAAUCCaCAAUUUCCCuc -5' |
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28269 | 5' | -43.2 | NC_005902.1 | + | 71498 | 0.9 | 0.503682 |
Target: 5'- uUAUAUAGCcUAGGUGUUAAAGGGGu -3' miRNA: 3'- cAUAUAUCGaAUCCACAAUUUCCCUc -5' |
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28269 | 5' | -43.2 | NC_005902.1 | + | 125576 | 0.97 | 0.26476 |
Target: 5'- aUAUAUAGCUUAGGUGUUAAAGGGu- -3' miRNA: 3'- cAUAUAUCGAAUCCACAAUUUCCCuc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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