miRNA display CGI


Results 41 - 60 of 239 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28269 5' -43.2 NC_005902.1 + 29494 0.88 0.624567
Target:  5'- aUAUAUAGCUUAGGUGUUaAAAGGGu- -3'
miRNA:   3'- cAUAUAUCGAAUCCACAA-UUUCCCuc -5'
28269 5' -43.2 NC_005902.1 + 29611 0.85 0.766874
Target:  5'- uGUAUAUAGCUUAGGUGUUAAAaGGu- -3'
miRNA:   3'- -CAUAUAUCGAAUCCACAAUUUcCCuc -5'
28269 5' -43.2 NC_005902.1 + 30829 0.85 0.77715
Target:  5'- uGUAUAUAGCUUAGaUGUUAAAGGGu- -3'
miRNA:   3'- -CAUAUAUCGAAUCcACAAUUUCCCuc -5'
28269 5' -43.2 NC_005902.1 + 31459 0.78 0.973602
Target:  5'- aGUAUAUAGCUUAGGU---AAAGGGu- -3'
miRNA:   3'- -CAUAUAUCGAAUCCAcaaUUUCCCuc -5'
28269 5' -43.2 NC_005902.1 + 34757 0.76 0.988881
Target:  5'- aUAUAUAGCUUAGGUGUUAAGa---- -3'
miRNA:   3'- cAUAUAUCGAAUCCACAAUUUcccuc -5'
28269 5' -43.2 NC_005902.1 + 36357 0.74 0.997314
Target:  5'- aUAUAUAGCUUAGGU---AAAGGGu- -3'
miRNA:   3'- cAUAUAUCGAAUCCAcaaUUUCCCuc -5'
28269 5' -43.2 NC_005902.1 + 36842 0.67 1
Target:  5'- aGUAUAUAGCUUAGGUaUUAAAa---- -3'
miRNA:   3'- -CAUAUAUCGAAUCCAcAAUUUcccuc -5'
28269 5' -43.2 NC_005902.1 + 37290 0.73 0.998987
Target:  5'- -cAUAUAGCUUAaGUGUUAAAGGa-- -3'
miRNA:   3'- caUAUAUCGAAUcCACAAUUUCCcuc -5'
28269 5' -43.2 NC_005902.1 + 38452 0.83 0.861274
Target:  5'- aUAUAUAGCUUAGGUGUUAcAGGa-- -3'
miRNA:   3'- cAUAUAUCGAAUCCACAAUuUCCcuc -5'
28269 5' -43.2 NC_005902.1 + 39307 0.94 0.358164
Target:  5'- uGUAUAUAGCUUAGGUGUUAAAGGa-- -3'
miRNA:   3'- -CAUAUAUCGAAUCCACAAUUUCCcuc -5'
28269 5' -43.2 NC_005902.1 + 39451 0.71 0.999913
Target:  5'- aGUAUAUAGCUUAGaUGUUAGAauGGAu -3'
miRNA:   3'- -CAUAUAUCGAAUCcACAAUUUc-CCUc -5'
28269 5' -43.2 NC_005902.1 + 39618 0.85 0.756454
Target:  5'- --uUAUAGCUUAGGUGUUAAAGGa-- -3'
miRNA:   3'- cauAUAUCGAAUCCACAAUUUCCcuc -5'
28269 5' -43.2 NC_005902.1 + 40095 0.85 0.756454
Target:  5'- aGUAUAUAGCUUAGaUGUUAAAGGGu- -3'
miRNA:   3'- -CAUAUAUCGAAUCcACAAUUUCCCuc -5'
28269 5' -43.2 NC_005902.1 + 40997 0.71 0.999913
Target:  5'- -cAUAUAGCUUAGGUGcUAAAGa--- -3'
miRNA:   3'- caUAUAUCGAAUCCACaAUUUCccuc -5'
28269 5' -43.2 NC_005902.1 + 42267 1 0.172073
Target:  5'- aGUAUAUAGCUUAGGUGUUAAAGGGu- -3'
miRNA:   3'- -CAUAUAUCGAAUCCACAAUUUCCCuc -5'
28269 5' -43.2 NC_005902.1 + 42400 0.7 0.999952
Target:  5'- aGUAUAUAGCUUAGGUGUc-------- -3'
miRNA:   3'- -CAUAUAUCGAAUCCACAauuucccuc -5'
28269 5' -43.2 NC_005902.1 + 43022 0.85 0.756454
Target:  5'- aGUAUAUAGCUUAGaUGUUAAAGGGu- -3'
miRNA:   3'- -CAUAUAUCGAAUCcACAAUUUCCCuc -5'
28269 5' -43.2 NC_005902.1 + 43887 0.87 0.680501
Target:  5'- aGUAUAUAGCUUAGGUGUUAAAGa--- -3'
miRNA:   3'- -CAUAUAUCGAAUCCACAAUUUCccuc -5'
28269 5' -43.2 NC_005902.1 + 44107 0.66 1
Target:  5'- aGUAUAUAGUUUAGcUGUUAAAGa--- -3'
miRNA:   3'- -CAUAUAUCGAAUCcACAAUUUCccuc -5'
28269 5' -43.2 NC_005902.1 + 45121 0.77 0.987273
Target:  5'- cGUAUAUAGCUUAGGUGUUAu------ -3'
miRNA:   3'- -CAUAUAUCGAAUCCACAAUuucccuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.