miRNA display CGI


Results 1 - 20 of 239 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28269 5' -43.2 NC_005902.1 + 20153 1.01 0.167365
Target:  5'- cGUAUAUAGCUUAGGUGUUAAAGGGu- -3'
miRNA:   3'- -CAUAUAUCGAAUCCACAAUUUCCCuc -5'
28269 5' -43.2 NC_005902.1 + 52367 0.86 0.702619
Target:  5'- uGUAUAUAGCUUAGGUGUUAAAGa--- -3'
miRNA:   3'- -CAUAUAUCGAAUCCACAAUUUCccuc -5'
28269 5' -43.2 NC_005902.1 + 162434 0.86 0.702619
Target:  5'- uGUGUAUAGCUUAGGUGUUAAAGa--- -3'
miRNA:   3'- -CAUAUAUCGAAUCCACAAUUUCccuc -5'
28269 5' -43.2 NC_005902.1 + 81324 0.66 1
Target:  5'- aGUAUAUAGCUUAaaaGUUAAAGGa-- -3'
miRNA:   3'- -CAUAUAUCGAAUccaCAAUUUCCcuc -5'
28269 5' -43.2 NC_005902.1 + 13226 0.97 0.26476
Target:  5'- aUAUAUAGCUUAGGUGUUAAAGGGu- -3'
miRNA:   3'- cAUAUAUCGAAUCCACAAUUUCCCuc -5'
28269 5' -43.2 NC_005902.1 + 16919 0.97 0.26476
Target:  5'- aUAUAUAGCUUAGGUGUUAAAGGGu- -3'
miRNA:   3'- cAUAUAUCGAAUCCACAAUUUCCCuc -5'
28269 5' -43.2 NC_005902.1 + 125576 0.97 0.26476
Target:  5'- aUAUAUAGCUUAGGUGUUAAAGGGu- -3'
miRNA:   3'- cAUAUAUCGAAUCCACAAUUUCCCuc -5'
28269 5' -43.2 NC_005902.1 + 104205 0.96 0.271727
Target:  5'- uUAUAUAGCUUAGGUGUUAAAGGGu- -3'
miRNA:   3'- cAUAUAUCGAAUCCACAAUUUCCCuc -5'
28269 5' -43.2 NC_005902.1 + 71498 0.9 0.503682
Target:  5'- uUAUAUAGCcUAGGUGUUAAAGGGGu -3'
miRNA:   3'- cAUAUAUCGaAUCCACAAUUUCCCUc -5'
28269 5' -43.2 NC_005902.1 + 1178 0.87 0.658192
Target:  5'- aUAUAUacAGCUUAGGUGUUAAAGGGu- -3'
miRNA:   3'- cAUAUA--UCGAAUCCACAAUUUCCCuc -5'
28269 5' -43.2 NC_005902.1 + 67032 0.89 0.591002
Target:  5'- aGUAUAUAGCUUAGGaGUUAAAGGGu- -3'
miRNA:   3'- -CAUAUAUCGAAUCCaCAAUUUCCCuc -5'
28269 5' -43.2 NC_005902.1 + 39307 0.94 0.358164
Target:  5'- uGUAUAUAGCUUAGGUGUUAAAGGa-- -3'
miRNA:   3'- -CAUAUAUCGAAUCCACAAUUUCCcuc -5'
28269 5' -43.2 NC_005902.1 + 42267 1 0.172073
Target:  5'- aGUAUAUAGCUUAGGUGUUAAAGGGu- -3'
miRNA:   3'- -CAUAUAUCGAAUCCACAAUUUCCCuc -5'
28269 5' -43.2 NC_005902.1 + 136088 0.88 0.613358
Target:  5'- uGUAUAUAGCUUAGGaGUUAAAGGGu- -3'
miRNA:   3'- -CAUAUAUCGAAUCCaCAAUUUCCCuc -5'
28269 5' -43.2 NC_005902.1 + 28813 1 0.181845
Target:  5'- uGUAUAUAGCUUAGGUGUUAAAGGGu- -3'
miRNA:   3'- -CAUAUAUCGAAUCCACAAUUUCCCuc -5'
28269 5' -43.2 NC_005902.1 + 114438 0.94 0.341106
Target:  5'- aGUAUAUAGCUUAGGUGUUAAAGGa-- -3'
miRNA:   3'- -CAUAUAUCGAAUCCACAAUUUCCcuc -5'
28269 5' -43.2 NC_005902.1 + 29494 0.88 0.624567
Target:  5'- aUAUAUAGCUUAGGUGUUaAAAGGGu- -3'
miRNA:   3'- cAUAUAUCGAAUCCACAA-UUUCCCuc -5'
28269 5' -43.2 NC_005902.1 + 99651 0.86 0.702619
Target:  5'- uGUAUAUAGCUUAGGUGUUAAAGa--- -3'
miRNA:   3'- -CAUAUAUCGAAUCCACAAUUUCccuc -5'
28269 5' -43.2 NC_005902.1 + 80777 1 0.181845
Target:  5'- gGUAUAUAGCUUAGGUGUUAAAGGGu- -3'
miRNA:   3'- -CAUAUAUCGAAUCCACAAUUUCCCuc -5'
28269 5' -43.2 NC_005902.1 + 54378 0.97 0.26476
Target:  5'- aUGUAUAGCUUAGGUGUUAAAGGGu- -3'
miRNA:   3'- cAUAUAUCGAAUCCACAAUUUCCCuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.