Results 1 - 20 of 239 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28269 | 5' | -43.2 | NC_005902.1 | + | 117107 | 0.7 | 0.999974 |
Target: 5'- uGUAUAUAGCUUAaGUGUUAAAaGGu- -3' miRNA: 3'- -CAUAUAUCGAAUcCACAAUUUcCCuc -5' |
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28269 | 5' | -43.2 | NC_005902.1 | + | 145373 | 0.68 | 0.999999 |
Target: 5'- aUAUAUAGCUUAaacGUUAAAGGGu- -3' miRNA: 3'- cAUAUAUCGAAUccaCAAUUUCCCuc -5' |
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28269 | 5' | -43.2 | NC_005902.1 | + | 63275 | 0.68 | 0.999999 |
Target: 5'- -cAUAUAGCUUAaagGUUAAAGGGu- -3' miRNA: 3'- caUAUAUCGAAUccaCAAUUUCCCuc -5' |
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28269 | 5' | -43.2 | NC_005902.1 | + | 22594 | 0.68 | 0.999999 |
Target: 5'- uUAUAUAGcCUUAGGauUUAAAGGGu- -3' miRNA: 3'- cAUAUAUC-GAAUCCacAAUUUCCCuc -5' |
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28269 | 5' | -43.2 | NC_005902.1 | + | 84969 | 0.68 | 0.999997 |
Target: 5'- aUAUAUAGUgUAGaUGUUAAAGGGu- -3' miRNA: 3'- cAUAUAUCGaAUCcACAAUUUCCCuc -5' |
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28269 | 5' | -43.2 | NC_005902.1 | + | 5159 | 0.69 | 0.999995 |
Target: 5'- -gAUAUuGCUUAGaUGUUAAAGGGu- -3' miRNA: 3'- caUAUAuCGAAUCcACAAUUUCCCuc -5' |
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28269 | 5' | -43.2 | NC_005902.1 | + | 122676 | 0.69 | 0.999991 |
Target: 5'- aGUGUAUAGCUUAGaGaUGUUAAAGa--- -3' miRNA: 3'- -CAUAUAUCGAAUC-C-ACAAUUUCccuc -5' |
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28269 | 5' | -43.2 | NC_005902.1 | + | 69212 | 0.69 | 0.999987 |
Target: 5'- uGUAUAUAaCUUAGaUGUUAAAGGGu- -3' miRNA: 3'- -CAUAUAUcGAAUCcACAAUUUCCCuc -5' |
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28269 | 5' | -43.2 | NC_005902.1 | + | 175654 | 0.69 | 0.999987 |
Target: 5'- aGUAUAUAGUUUAaGUaUUAAAGGGGu -3' miRNA: 3'- -CAUAUAUCGAAUcCAcAAUUUCCCUc -5' |
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28269 | 5' | -43.2 | NC_005902.1 | + | 49629 | 0.68 | 0.999999 |
Target: 5'- uUAUAUaAGcCUUAGGgGUUAAAGGGu- -3' miRNA: 3'- cAUAUA-UC-GAAUCCaCAAUUUCCCuc -5' |
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28269 | 5' | -43.2 | NC_005902.1 | + | 182665 | 0.68 | 0.999999 |
Target: 5'- aUGUAUAGCUUAGGUGUa-------- -3' miRNA: 3'- cAUAUAUCGAAUCCACAauuucccuc -5' |
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28269 | 5' | -43.2 | NC_005902.1 | + | 92331 | 0.68 | 0.999999 |
Target: 5'- cUAUAUAGCUUAGGU---AAAGGa-- -3' miRNA: 3'- cAUAUAUCGAAUCCAcaaUUUCCcuc -5' |
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28269 | 5' | -43.2 | NC_005902.1 | + | 44107 | 0.66 | 1 |
Target: 5'- aGUAUAUAGUUUAGcUGUUAAAGa--- -3' miRNA: 3'- -CAUAUAUCGAAUCcACAAUUUCccuc -5' |
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28269 | 5' | -43.2 | NC_005902.1 | + | 173499 | 0.66 | 1 |
Target: 5'- uGUAUAUAaUUUAGGUaUUAAAGGGu- -3' miRNA: 3'- -CAUAUAUcGAAUCCAcAAUUUCCCuc -5' |
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28269 | 5' | -43.2 | NC_005902.1 | + | 133704 | 0.66 | 1 |
Target: 5'- -aAUGUAGCgagugagUAuGUGUUAAAGGGu- -3' miRNA: 3'- caUAUAUCGa------AUcCACAAUUUCCCuc -5' |
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28269 | 5' | -43.2 | NC_005902.1 | + | 133270 | 0.66 | 1 |
Target: 5'- uUAUAUAaCUUAGGUGUUAAAaGGu- -3' miRNA: 3'- cAUAUAUcGAAUCCACAAUUUcCCuc -5' |
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28269 | 5' | -43.2 | NC_005902.1 | + | 90279 | 0.67 | 1 |
Target: 5'- aUAUAUAGCUUAaGUGUUAAAaGGu- -3' miRNA: 3'- cAUAUAUCGAAUcCACAAUUUcCCuc -5' |
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28269 | 5' | -43.2 | NC_005902.1 | + | 36842 | 0.67 | 1 |
Target: 5'- aGUAUAUAGCUUAGGUaUUAAAa---- -3' miRNA: 3'- -CAUAUAUCGAAUCCAcAAUUUcccuc -5' |
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28269 | 5' | -43.2 | NC_005902.1 | + | 127816 | 0.68 | 0.999999 |
Target: 5'- cUAUAUAGCUUAuGUGUUAAAGa--- -3' miRNA: 3'- cAUAUAUCGAAUcCACAAUUUCccuc -5' |
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28269 | 5' | -43.2 | NC_005902.1 | + | 124519 | 0.68 | 0.999999 |
Target: 5'- aUAUAUAGCUUAaGUaUUAAAGGGu- -3' miRNA: 3'- cAUAUAUCGAAUcCAcAAUUUCCCuc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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