Results 1 - 20 of 239 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28269 | 5' | -43.2 | NC_005902.1 | + | 18886 | 1.12 | 0.041504 |
Target: 5'- aGUAUAUAGCUUAGGUGUUAAAGGGAGa -3' miRNA: 3'- -CAUAUAUCGAAUCCACAAUUUCCCUC- -5' |
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28269 | 5' | -43.2 | NC_005902.1 | + | 23652 | 1.06 | 0.081918 |
Target: 5'- aGUAUGUAGCUUAGGUGUUAAAGGGAa -3' miRNA: 3'- -CAUAUAUCGAAUCCACAAUUUCCCUc -5' |
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28269 | 5' | -43.2 | NC_005902.1 | + | 20153 | 1.01 | 0.167365 |
Target: 5'- cGUAUAUAGCUUAGGUGUUAAAGGGu- -3' miRNA: 3'- -CAUAUAUCGAAUCCACAAUUUCCCuc -5' |
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28269 | 5' | -43.2 | NC_005902.1 | + | 86485 | 1 | 0.172073 |
Target: 5'- aGUAUAUAGCUUAGGUGUUAAAGGGu- -3' miRNA: 3'- -CAUAUAUCGAAUCCACAAUUUCCCuc -5' |
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28269 | 5' | -43.2 | NC_005902.1 | + | 57268 | 1 | 0.172073 |
Target: 5'- aGUAUAUAGCUUAGGUGUUAAAGGGu- -3' miRNA: 3'- -CAUAUAUCGAAUCCACAAUUUCCCuc -5' |
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28269 | 5' | -43.2 | NC_005902.1 | + | 131171 | 1 | 0.172073 |
Target: 5'- aGUAUAUAGCUUAGGUGUUAAAGGGu- -3' miRNA: 3'- -CAUAUAUCGAAUCCACAAUUUCCCuc -5' |
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28269 | 5' | -43.2 | NC_005902.1 | + | 42267 | 1 | 0.172073 |
Target: 5'- aGUAUAUAGCUUAGGUGUUAAAGGGu- -3' miRNA: 3'- -CAUAUAUCGAAUCCACAAUUUCCCuc -5' |
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28269 | 5' | -43.2 | NC_005902.1 | + | 172858 | 1 | 0.181845 |
Target: 5'- gGUAUAUAGCUUAGGUGUUAAAGGGu- -3' miRNA: 3'- -CAUAUAUCGAAUCCACAAUUUCCCuc -5' |
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28269 | 5' | -43.2 | NC_005902.1 | + | 138805 | 1 | 0.181845 |
Target: 5'- uGUAUAUAGCUUAGGUGUUAAAGGGu- -3' miRNA: 3'- -CAUAUAUCGAAUCCACAAUUUCCCuc -5' |
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28269 | 5' | -43.2 | NC_005902.1 | + | 94183 | 1 | 0.181845 |
Target: 5'- uGUAUAUAGCUUAGGUGUUAAAGGGu- -3' miRNA: 3'- -CAUAUAUCGAAUCCACAAUUUCCCuc -5' |
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28269 | 5' | -43.2 | NC_005902.1 | + | 80777 | 1 | 0.181845 |
Target: 5'- gGUAUAUAGCUUAGGUGUUAAAGGGu- -3' miRNA: 3'- -CAUAUAUCGAAUCCACAAUUUCCCuc -5' |
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28269 | 5' | -43.2 | NC_005902.1 | + | 28813 | 1 | 0.181845 |
Target: 5'- uGUAUAUAGCUUAGGUGUUAAAGGGu- -3' miRNA: 3'- -CAUAUAUCGAAUCCACAAUUUCCCuc -5' |
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28269 | 5' | -43.2 | NC_005902.1 | + | 54378 | 0.97 | 0.26476 |
Target: 5'- aUGUAUAGCUUAGGUGUUAAAGGGu- -3' miRNA: 3'- cAUAUAUCGAAUCCACAAUUUCCCuc -5' |
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28269 | 5' | -43.2 | NC_005902.1 | + | 13226 | 0.97 | 0.26476 |
Target: 5'- aUAUAUAGCUUAGGUGUUAAAGGGu- -3' miRNA: 3'- cAUAUAUCGAAUCCACAAUUUCCCuc -5' |
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28269 | 5' | -43.2 | NC_005902.1 | + | 16919 | 0.97 | 0.26476 |
Target: 5'- aUAUAUAGCUUAGGUGUUAAAGGGu- -3' miRNA: 3'- cAUAUAUCGAAUCCACAAUUUCCCuc -5' |
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28269 | 5' | -43.2 | NC_005902.1 | + | 88866 | 0.97 | 0.26476 |
Target: 5'- aUAUAUAGCUUAGGUGUUAAAGGGu- -3' miRNA: 3'- cAUAUAUCGAAUCCACAAUUUCCCuc -5' |
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28269 | 5' | -43.2 | NC_005902.1 | + | 162785 | 0.97 | 0.26476 |
Target: 5'- aUAUAUAGCUUAGGUGUUAAAGGGu- -3' miRNA: 3'- cAUAUAUCGAAUCCACAAUUUCCCuc -5' |
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28269 | 5' | -43.2 | NC_005902.1 | + | 135831 | 0.97 | 0.26476 |
Target: 5'- aUAUAUAGCUUAGGUGUUAAAGGGu- -3' miRNA: 3'- cAUAUAUCGAAUCCACAAUUUCCCuc -5' |
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28269 | 5' | -43.2 | NC_005902.1 | + | 125576 | 0.97 | 0.26476 |
Target: 5'- aUAUAUAGCUUAGGUGUUAAAGGGu- -3' miRNA: 3'- cAUAUAUCGAAUCCACAAUUUCCCuc -5' |
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28269 | 5' | -43.2 | NC_005902.1 | + | 104205 | 0.96 | 0.271727 |
Target: 5'- uUAUAUAGCUUAGGUGUUAAAGGGu- -3' miRNA: 3'- cAUAUAUCGAAUCCACAAUUUCCCuc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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