miRNA display CGI


Results 1 - 20 of 239 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28269 5' -43.2 NC_005902.1 + 184895 0.77 0.987273
Target:  5'- uGUAUAcAGCUUAGGUcUUAAAGGGu- -3'
miRNA:   3'- -CAUAUaUCGAAUCCAcAAUUUCCCuc -5'
28269 5' -43.2 NC_005902.1 + 184780 0.74 0.998149
Target:  5'- aUAUAUAGCcUAGGUGUUGAAGa--- -3'
miRNA:   3'- cAUAUAUCGaAUCCACAAUUUCccuc -5'
28269 5' -43.2 NC_005902.1 + 184631 0.78 0.976411
Target:  5'- cGUAUAUAGCUUAGGgGUUAaaAAGGuGAc -3'
miRNA:   3'- -CAUAUAUCGAAUCCaCAAU--UUCC-CUc -5'
28269 5' -43.2 NC_005902.1 + 182967 0.77 0.987273
Target:  5'- aUAUAUAGCUUAGGUGUUAAAu---- -3'
miRNA:   3'- cAUAUAUCGAAUCCACAAUUUcccuc -5'
28269 5' -43.2 NC_005902.1 + 182665 0.68 0.999999
Target:  5'- aUGUAUAGCUUAGGUGUa-------- -3'
miRNA:   3'- cAUAUAUCGAAUCCACAauuucccuc -5'
28269 5' -43.2 NC_005902.1 + 181431 0.69 0.999995
Target:  5'- aGUAUAUcGCUUAGaUGUUAAAGGa-- -3'
miRNA:   3'- -CAUAUAuCGAAUCcACAAUUUCCcuc -5'
28269 5' -43.2 NC_005902.1 + 180393 0.78 0.978995
Target:  5'- aGUAUAUAGCUUAauUGUUAAAGGGu- -3'
miRNA:   3'- -CAUAUAUCGAAUccACAAUUUCCCuc -5'
28269 5' -43.2 NC_005902.1 + 179727 0.76 0.992774
Target:  5'- uGUAUAUGGCUUAGGUcuuaaagaUUAAAGGGu- -3'
miRNA:   3'- -CAUAUAUCGAAUCCAc-------AAUUUCCCuc -5'
28269 5' -43.2 NC_005902.1 + 178441 0.83 0.852797
Target:  5'- aGUAUAUAaUUUAGGUGUUAAAGGGuGa -3'
miRNA:   3'- -CAUAUAUcGAAUCCACAAUUUCCCuC- -5'
28269 5' -43.2 NC_005902.1 + 177627 0.7 0.999965
Target:  5'- uGUAUAUAGUUUAGGUGUaaAAAGuGAa -3'
miRNA:   3'- -CAUAUAUCGAAUCCACAa-UUUCcCUc -5'
28269 5' -43.2 NC_005902.1 + 175654 0.69 0.999987
Target:  5'- aGUAUAUAGUUUAaGUaUUAAAGGGGu -3'
miRNA:   3'- -CAUAUAUCGAAUcCAcAAUUUCCCUc -5'
28269 5' -43.2 NC_005902.1 + 173499 0.66 1
Target:  5'- uGUAUAUAaUUUAGGUaUUAAAGGGu- -3'
miRNA:   3'- -CAUAUAUcGAAUCCAcAAUUUCCCuc -5'
28269 5' -43.2 NC_005902.1 + 173217 0.7 0.999981
Target:  5'- aUAUAUAaCUUAGGaGUUAAAGGGu- -3'
miRNA:   3'- cAUAUAUcGAAUCCaCAAUUUCCCuc -5'
28269 5' -43.2 NC_005902.1 + 172858 1 0.181845
Target:  5'- gGUAUAUAGCUUAGGUGUUAAAGGGu- -3'
miRNA:   3'- -CAUAUAUCGAAUCCACAAUUUCCCuc -5'
28269 5' -43.2 NC_005902.1 + 170619 0.83 0.844079
Target:  5'- aUAUAUAGCUUAGGUGUUAAAGa--- -3'
miRNA:   3'- cAUAUAUCGAAUCCACAAUUUCccuc -5'
28269 5' -43.2 NC_005902.1 + 169577 0.8 0.94203
Target:  5'- aGUGUAUAGUUUAGGUGUUAAAaGGu- -3'
miRNA:   3'- -CAUAUAUCGAAUCCACAAUUUcCCuc -5'
28269 5' -43.2 NC_005902.1 + 169167 0.88 0.602167
Target:  5'- -gAUAUAGCUUAGGUGUUAAAGGa-- -3'
miRNA:   3'- caUAUAUCGAAUCCACAAUUUCCcuc -5'
28269 5' -43.2 NC_005902.1 + 167292 0.85 0.77715
Target:  5'- uGUAUAUAaCUUAGGUGUUAAAGGGu- -3'
miRNA:   3'- -CAUAUAUcGAAUCCACAAUUUCCCuc -5'
28269 5' -43.2 NC_005902.1 + 167185 0.86 0.735231
Target:  5'- cGUAUAUAGCUUAGGUGUUAAAaGGu- -3'
miRNA:   3'- -CAUAUAUCGAAUCCACAAUUUcCCuc -5'
28269 5' -43.2 NC_005902.1 + 165979 0.84 0.797222
Target:  5'- uGUAUAUGGCUUAuGUGUUAAAGGGu- -3'
miRNA:   3'- -CAUAUAUCGAAUcCACAAUUUCCCuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.