Results 41 - 60 of 70 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28270 | 3' | -40.4 | NC_005902.1 | + | 17643 | 0.77 | 0.998939 |
Target: 5'- -uUUAAACCCUAAGGCUUAUAc---- -3' miRNA: 3'- ucAAUUUGGGAUUUCGAAUGUauuca -5' |
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28270 | 3' | -40.4 | NC_005902.1 | + | 163451 | 0.78 | 0.998393 |
Target: 5'- -uUUAAAUCCUAAGGCU-AUAUAAGUa -3' miRNA: 3'- ucAAUUUGGGAUUUCGAaUGUAUUCA- -5' |
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28270 | 3' | -40.4 | NC_005902.1 | + | 90704 | 0.78 | 0.998042 |
Target: 5'- -uUUAAAUCCUAAGGCUUAUAcaauUGAGUg -3' miRNA: 3'- ucAAUUUGGGAUUUCGAAUGU----AUUCA- -5' |
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28270 | 3' | -40.4 | NC_005902.1 | + | 95460 | 0.79 | 0.995177 |
Target: 5'- -uUUAAAUCCUAAGGCUUAUAcAAGUa -3' miRNA: 3'- ucAAUUUGGGAUUUCGAAUGUaUUCA- -5' |
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28270 | 3' | -40.4 | NC_005902.1 | + | 46259 | 0.79 | 0.995177 |
Target: 5'- -uUUAAAUCCUAAGGCUUAUAUAAa- -3' miRNA: 3'- ucAAUUUGGGAUUUCGAAUGUAUUca -5' |
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28270 | 3' | -40.4 | NC_005902.1 | + | 36317 | 0.79 | 0.995177 |
Target: 5'- -uUUAAAUCCUAAGGCUUAUAcAAGUg -3' miRNA: 3'- ucAAUUUGGGAUUUCGAAUGUaUUCA- -5' |
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28270 | 3' | -40.4 | NC_005902.1 | + | 170640 | 0.8 | 0.993338 |
Target: 5'- gAGUUAAACCCUAAGGCUU-CAc---- -3' miRNA: 3'- -UCAAUUUGGGAUUUCGAAuGUauuca -5' |
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28270 | 3' | -40.4 | NC_005902.1 | + | 162705 | 0.8 | 0.993338 |
Target: 5'- gGGUUAAACCCUAAuguuugcaauGCUUACAUAu-- -3' miRNA: 3'- -UCAAUUUGGGAUUu---------CGAAUGUAUuca -5' |
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28270 | 3' | -40.4 | NC_005902.1 | + | 142215 | 0.8 | 0.992229 |
Target: 5'- -uUUAAAUCCUAAGGCUUGCAcGAGc -3' miRNA: 3'- ucAAUUUGGGAUUUCGAAUGUaUUCa -5' |
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28270 | 3' | -40.4 | NC_005902.1 | + | 75938 | 0.8 | 0.992229 |
Target: 5'- -uUUAAAUCCUAAAGCUUAUAcAAGUg -3' miRNA: 3'- ucAAUUUGGGAUUUCGAAUGUaUUCA- -5' |
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28270 | 3' | -40.4 | NC_005902.1 | + | 175696 | 0.8 | 0.990977 |
Target: 5'- -uUUAAAUCCUAAGGCUUAUAcGAGUa -3' miRNA: 3'- ucAAUUUGGGAUUUCGAAUGUaUUCA- -5' |
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28270 | 3' | -40.4 | NC_005902.1 | + | 154716 | 0.8 | 0.990977 |
Target: 5'- aGGcUUAAAUCCUAAAGCUUAUAcAAGUg -3' miRNA: 3'- -UC-AAUUUGGGAUUUCGAAUGUaUUCA- -5' |
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28270 | 3' | -40.4 | NC_005902.1 | + | 137570 | 0.8 | 0.990977 |
Target: 5'- -uUUGAAUCCUAAAGCUUAUAUAAa- -3' miRNA: 3'- ucAAUUUGGGAUUUCGAAUGUAUUca -5' |
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28270 | 3' | -40.4 | NC_005902.1 | + | 143768 | 0.82 | 0.979831 |
Target: 5'- gGGUUAAGUCCUAAGGCUUAUAcAAGUg -3' miRNA: 3'- -UCAAUUUGGGAUUUCGAAUGUaUUCA- -5' |
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28270 | 3' | -40.4 | NC_005902.1 | + | 12179 | 0.82 | 0.974455 |
Target: 5'- --aUAAAUCCUAAGGUUUAUAUAAGUg -3' miRNA: 3'- ucaAUUUGGGAUUUCGAAUGUAUUCA- -5' |
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28270 | 3' | -40.4 | NC_005902.1 | + | 131071 | 0.82 | 0.974455 |
Target: 5'- gGGUUAAAUUCUAAGGCUUAUAcAAGUa -3' miRNA: 3'- -UCAAUUUGGGAUUUCGAAUGUaUUCA- -5' |
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28270 | 3' | -40.4 | NC_005902.1 | + | 116778 | 0.82 | 0.971406 |
Target: 5'- -uUUAAAUUCUAAGGCUUAUAUAAGUg -3' miRNA: 3'- ucAAUUUGGGAUUUCGAAUGUAUUCA- -5' |
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28270 | 3' | -40.4 | NC_005902.1 | + | 136415 | 0.85 | 0.913162 |
Target: 5'- -uUUAAcCCCUAAGGCUUAUAUAAGUa -3' miRNA: 3'- ucAAUUuGGGAUUUCGAAUGUAUUCA- -5' |
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28270 | 3' | -40.4 | NC_005902.1 | + | 88504 | 0.86 | 0.899315 |
Target: 5'- -uUUAAACCCcGAGGCUUAUAUGAGUg -3' miRNA: 3'- ucAAUUUGGGaUUUCGAAUGUAUUCA- -5' |
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28270 | 3' | -40.4 | NC_005902.1 | + | 112213 | 0.86 | 0.891952 |
Target: 5'- aGGUUAAAUCCUGAAGUaUAUAUAAGUa -3' miRNA: 3'- -UCAAUUUGGGAUUUCGaAUGUAUUCA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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