miRNA display CGI


Results 21 - 40 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28270 3' -40.4 NC_005902.1 + 17685 0.68 1
Target:  5'- --aUAAGCCUUAGGGUUUAaaggAUGAGUa -3'
miRNA:   3'- ucaAUUUGGGAUUUCGAAUg---UAUUCA- -5'
28270 3' -40.4 NC_005902.1 + 114376 0.68 1
Target:  5'- gAGUUAaggauuAACCUuucaaaacaUAAAGCUUAUAUAAGc -3'
miRNA:   3'- -UCAAU------UUGGG---------AUUUCGAAUGUAUUCa -5'
28270 3' -40.4 NC_005902.1 + 31221 0.69 1
Target:  5'- gAGUUAAAUCCUAAAGaguugucgaugaugcUUUGCAUAAu- -3'
miRNA:   3'- -UCAAUUUGGGAUUUC---------------GAAUGUAUUca -5'
28270 3' -40.4 NC_005902.1 + 130946 0.72 0.999999
Target:  5'- -uUUAAAUCCUAAAGCUUAUAc---- -3'
miRNA:   3'- ucAAUUUGGGAUUUCGAAUGUauuca -5'
28270 3' -40.4 NC_005902.1 + 151371 0.72 0.999999
Target:  5'- -uUUAAAUCCUAAAGCUUAUAc---- -3'
miRNA:   3'- ucAAUUUGGGAUUUCGAAUGUauuca -5'
28270 3' -40.4 NC_005902.1 + 173342 0.72 0.999999
Target:  5'- cGUUAAAUCUUAAGGCUUAUAc---- -3'
miRNA:   3'- uCAAUUUGGGAUUUCGAAUGUauuca -5'
28270 3' -40.4 NC_005902.1 + 184287 0.72 0.999998
Target:  5'- ----uAAUCCaUAAAGCUUAUAUAAGUa -3'
miRNA:   3'- ucaauUUGGG-AUUUCGAAUGUAUUCA- -5'
28270 3' -40.4 NC_005902.1 + 52445 0.72 0.999998
Target:  5'- -uUUAAAUCCUAGGaCUUAUAUAAGUg -3'
miRNA:   3'- ucAAUUUGGGAUUUcGAAUGUAUUCA- -5'
28270 3' -40.4 NC_005902.1 + 122857 0.72 0.999997
Target:  5'- -uUUAAAUCCUAAGGCUUAUAUu--- -3'
miRNA:   3'- ucAAUUUGGGAUUUCGAAUGUAuuca -5'
28270 3' -40.4 NC_005902.1 + 80286 0.73 0.999996
Target:  5'- uAGUU-GACCUUGAGGU--ACAUGAGUa -3'
miRNA:   3'- -UCAAuUUGGGAUUUCGaaUGUAUUCA- -5'
28270 3' -40.4 NC_005902.1 + 84876 0.73 0.999991
Target:  5'- -aUUAAAUCUUAAGGCUUAaAUGAGUg -3'
miRNA:   3'- ucAAUUUGGGAUUUCGAAUgUAUUCA- -5'
28270 3' -40.4 NC_005902.1 + 48438 0.73 0.999991
Target:  5'- gGGUUAAaaaguauucACCCUAAGGCUUAUAc---- -3'
miRNA:   3'- -UCAAUU---------UGGGAUUUCGAAUGUauuca -5'
28270 3' -40.4 NC_005902.1 + 93366 0.74 0.999966
Target:  5'- -uUUAAAUCCUAAAGUUUAUAUAAa- -3'
miRNA:   3'- ucAAUUUGGGAUUUCGAAUGUAUUca -5'
28270 3' -40.4 NC_005902.1 + 81223 0.74 0.999966
Target:  5'- gGGUUAAACUgUAAGaCUUAUAUAAGUa -3'
miRNA:   3'- -UCAAUUUGGgAUUUcGAAUGUAUUCA- -5'
28270 3' -40.4 NC_005902.1 + 149001 0.74 0.999966
Target:  5'- -uUUAAAaUCUAAAGCUUACAUAAGc -3'
miRNA:   3'- ucAAUUUgGGAUUUCGAAUGUAUUCa -5'
28270 3' -40.4 NC_005902.1 + 72927 0.76 0.999666
Target:  5'- -uUUAAACCUUAAGGCUUAUAcuAGUa -3'
miRNA:   3'- ucAAUUUGGGAUUUCGAAUGUauUCA- -5'
28270 3' -40.4 NC_005902.1 + 133565 0.76 0.999573
Target:  5'- -uUUAAAUCCUAGGGCUUAUAUucGUu -3'
miRNA:   3'- ucAAUUUGGGAUUUCGAAUGUAuuCA- -5'
28270 3' -40.4 NC_005902.1 + 171142 0.76 0.999573
Target:  5'- -uUUAAAUuuUAAGGCUUAUAUAAGUg -3'
miRNA:   3'- ucAAUUUGggAUUUCGAAUGUAUUCA- -5'
28270 3' -40.4 NC_005902.1 + 33085 0.76 0.999458
Target:  5'- -uUUAAAUCCUAAGGCUUAUAUAc-- -3'
miRNA:   3'- ucAAUUUGGGAUUUCGAAUGUAUuca -5'
28270 3' -40.4 NC_005902.1 + 15871 0.77 0.999317
Target:  5'- -uUUAAAUUCUAAGGUUUAUAUGAGUa -3'
miRNA:   3'- ucAAUUUGGGAUUUCGAAUGUAUUCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.