miRNA display CGI


Results 21 - 40 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28270 3' -40.4 NC_005902.1 + 82112 0.86 0.891952
Target:  5'- cAGUUuucAAUCCUAAGGCUUAUAUAAGUg -3'
miRNA:   3'- -UCAAu--UUGGGAUUUCGAAUGUAUUCA- -5'
28270 3' -40.4 NC_005902.1 + 148149 0.7 1
Target:  5'- --cUAAAUCCUAAAGCU---GUAAGUg -3'
miRNA:   3'- ucaAUUUGGGAUUUCGAaugUAUUCA- -5'
28270 3' -40.4 NC_005902.1 + 48438 0.73 0.999991
Target:  5'- gGGUUAAaaaguauucACCCUAAGGCUUAUAc---- -3'
miRNA:   3'- -UCAAUU---------UGGGAUUUCGAAUGUauuca -5'
28270 3' -40.4 NC_005902.1 + 143487 0.9 0.7624
Target:  5'- -uUUAAAUCCUAAGGCUUAUAUGAGUg -3'
miRNA:   3'- ucAAUUUGGGAUUUCGAAUGUAUUCA- -5'
28270 3' -40.4 NC_005902.1 + 68999 0.71 1
Target:  5'- -uUUAAAUCCUAAGGCUUAUAc---- -3'
miRNA:   3'- ucAAUUUGGGAUUUCGAAUGUauuca -5'
28270 3' -40.4 NC_005902.1 + 34629 0.66 1
Target:  5'- ----cAACCCUuuaaauuccAAGGUUUAUAUAAGUa -3'
miRNA:   3'- ucaauUUGGGA---------UUUCGAAUGUAUUCA- -5'
28270 3' -40.4 NC_005902.1 + 184520 0.71 1
Target:  5'- -uUUAAAUCCUAAGGCUUAUAc---- -3'
miRNA:   3'- ucAAUUUGGGAUUUCGAAUGUauuca -5'
28270 3' -40.4 NC_005902.1 + 88950 0.92 0.650659
Target:  5'- aAGUUAAAUUCUAAGGCUUAUAUAAGUg -3'
miRNA:   3'- -UCAAUUUGGGAUUUCGAAUGUAUUCA- -5'
28270 3' -40.4 NC_005902.1 + 168363 0.96 0.48231
Target:  5'- -uUUAAACCCUAAGGCUUAUAUAAGUg -3'
miRNA:   3'- ucAAUUUGGGAUUUCGAAUGUAUUCA- -5'
28270 3' -40.4 NC_005902.1 + 112213 0.86 0.891952
Target:  5'- aGGUUAAAUCCUGAAGUaUAUAUAAGUa -3'
miRNA:   3'- -UCAAUUUGGGAUUUCGaAUGUAUUCA- -5'
28270 3' -40.4 NC_005902.1 + 163451 0.78 0.998393
Target:  5'- -uUUAAAUCCUAAGGCU-AUAUAAGUa -3'
miRNA:   3'- ucAAUUUGGGAUUUCGAaUGUAUUCA- -5'
28270 3' -40.4 NC_005902.1 + 88823 0.67 1
Target:  5'- aGGaUUAAAUCCUAAAGUUUAUAUu--- -3'
miRNA:   3'- -UC-AAUUUGGGAUUUCGAAUGUAuuca -5'
28270 3' -40.4 NC_005902.1 + 137570 0.8 0.990977
Target:  5'- -uUUGAAUCCUAAAGCUUAUAUAAa- -3'
miRNA:   3'- ucAAUUUGGGAUUUCGAAUGUAUUca -5'
28270 3' -40.4 NC_005902.1 + 142215 0.8 0.992229
Target:  5'- -uUUAAAUCCUAAGGCUUGCAcGAGc -3'
miRNA:   3'- ucAAUUUGGGAUUUCGAAUGUaUUCa -5'
28270 3' -40.4 NC_005902.1 + 162705 0.8 0.993338
Target:  5'- gGGUUAAACCCUAAuguuugcaauGCUUACAUAu-- -3'
miRNA:   3'- -UCAAUUUGGGAUUu---------CGAAUGUAUuca -5'
28270 3' -40.4 NC_005902.1 + 36317 0.79 0.995177
Target:  5'- -uUUAAAUCCUAAGGCUUAUAcAAGUg -3'
miRNA:   3'- ucAAUUUGGGAUUUCGAAUGUaUUCA- -5'
28270 3' -40.4 NC_005902.1 + 46259 0.79 0.995177
Target:  5'- -uUUAAAUCCUAAGGCUUAUAUAAa- -3'
miRNA:   3'- ucAAUUUGGGAUUUCGAAUGUAUUca -5'
28270 3' -40.4 NC_005902.1 + 107376 0.7 1
Target:  5'- -uUUAAAUCCUAGGGCUUAUAc---- -3'
miRNA:   3'- ucAAUUUGGGAUUUCGAAUGUauuca -5'
28270 3' -40.4 NC_005902.1 + 152918 0.71 1
Target:  5'- -uUUAAAUCCUAAGGCUUAUAc---- -3'
miRNA:   3'- ucAAUUUGGGAUUUCGAAUGUauuca -5'
28270 3' -40.4 NC_005902.1 + 120376 0.71 1
Target:  5'- -uUUAAAUCCUAAGGCUUAUAc---- -3'
miRNA:   3'- ucAAUUUGGGAUUUCGAAUGUauuca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.