miRNA display CGI


Results 1 - 20 of 70 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28270 3' -40.4 NC_005902.1 + 100384 1 0.337776
Target:  5'- gGGUUAAAUCCUAAGGCUUAUAUGAGUg -3'
miRNA:   3'- -UCAAUUUGGGAUUUCGAAUGUAUUCA- -5'
28270 3' -40.4 NC_005902.1 + 149001 0.74 0.999966
Target:  5'- -uUUAAAaUCUAAAGCUUACAUAAGc -3'
miRNA:   3'- ucAAUUUgGGAUUUCGAAUGUAUUCa -5'
28270 3' -40.4 NC_005902.1 + 48438 0.73 0.999991
Target:  5'- gGGUUAAaaaguauucACCCUAAGGCUUAUAc---- -3'
miRNA:   3'- -UCAAUU---------UGGGAUUUCGAAUGUauuca -5'
28270 3' -40.4 NC_005902.1 + 78630 0.66 1
Target:  5'- -uUUAAAUuuUAAGGCUUAUAcAAGUa -3'
miRNA:   3'- ucAAUUUGggAUUUCGAAUGUaUUCA- -5'
28270 3' -40.4 NC_005902.1 + 143487 0.9 0.7624
Target:  5'- -uUUAAAUCCUAAGGCUUAUAUGAGUg -3'
miRNA:   3'- ucAAUUUGGGAUUUCGAAUGUAUUCA- -5'
28270 3' -40.4 NC_005902.1 + 82112 0.86 0.891952
Target:  5'- cAGUUuucAAUCCUAAGGCUUAUAUAAGUg -3'
miRNA:   3'- -UCAAu--UUGGGAUUUCGAAUGUAUUCA- -5'
28270 3' -40.4 NC_005902.1 + 136415 0.85 0.913162
Target:  5'- -uUUAAcCCCUAAGGCUUAUAUAAGUa -3'
miRNA:   3'- ucAAUUuGGGAUUUCGAAUGUAUUCA- -5'
28270 3' -40.4 NC_005902.1 + 143768 0.82 0.979831
Target:  5'- gGGUUAAGUCCUAAGGCUUAUAcAAGUg -3'
miRNA:   3'- -UCAAUUUGGGAUUUCGAAUGUaUUCA- -5'
28270 3' -40.4 NC_005902.1 + 170640 0.8 0.993338
Target:  5'- gAGUUAAACCCUAAGGCUU-CAc---- -3'
miRNA:   3'- -UCAAUUUGGGAUUUCGAAuGUauuca -5'
28270 3' -40.4 NC_005902.1 + 81223 0.74 0.999966
Target:  5'- gGGUUAAACUgUAAGaCUUAUAUAAGUa -3'
miRNA:   3'- -UCAAUUUGGgAUUUcGAAUGUAUUCA- -5'
28270 3' -40.4 NC_005902.1 + 15871 0.77 0.999317
Target:  5'- -uUUAAAUUCUAAGGUUUAUAUGAGUa -3'
miRNA:   3'- ucAAUUUGGGAUUUCGAAUGUAUUCA- -5'
28270 3' -40.4 NC_005902.1 + 75938 0.8 0.992229
Target:  5'- -uUUAAAUCCUAAAGCUUAUAcAAGUg -3'
miRNA:   3'- ucAAUUUGGGAUUUCGAAUGUaUUCA- -5'
28270 3' -40.4 NC_005902.1 + 139565 0.97 0.450916
Target:  5'- gAGUUAAACCCUAAGGCUUAUAUAcaAGUa -3'
miRNA:   3'- -UCAAUUUGGGAUUUCGAAUGUAU--UCA- -5'
28270 3' -40.4 NC_005902.1 + 33085 0.76 0.999458
Target:  5'- -uUUAAAUCCUAAGGCUUAUAUAc-- -3'
miRNA:   3'- ucAAUUUGGGAUUUCGAAUGUAUuca -5'
28270 3' -40.4 NC_005902.1 + 168363 0.96 0.48231
Target:  5'- -uUUAAACCCUAAGGCUUAUAUAAGUg -3'
miRNA:   3'- ucAAUUUGGGAUUUCGAAUGUAUUCA- -5'
28270 3' -40.4 NC_005902.1 + 154716 0.8 0.990977
Target:  5'- aGGcUUAAAUCCUAAAGCUUAUAcAAGUg -3'
miRNA:   3'- -UC-AAUUUGGGAUUUCGAAUGUaUUCA- -5'
28270 3' -40.4 NC_005902.1 + 72927 0.76 0.999666
Target:  5'- -uUUAAACCUUAAGGCUUAUAcuAGUa -3'
miRNA:   3'- ucAAUUUGGGAUUUCGAAUGUauUCA- -5'
28270 3' -40.4 NC_005902.1 + 93366 0.74 0.999966
Target:  5'- -uUUAAAUCCUAAAGUUUAUAUAAa- -3'
miRNA:   3'- ucAAUUUGGGAUUUCGAAUGUAUUca -5'
28270 3' -40.4 NC_005902.1 + 88950 0.92 0.650659
Target:  5'- aAGUUAAAUUCUAAGGCUUAUAUAAGUg -3'
miRNA:   3'- -UCAAUUUGGGAUUUCGAAUGUAUUCA- -5'
28270 3' -40.4 NC_005902.1 + 112213 0.86 0.891952
Target:  5'- aGGUUAAAUCCUGAAGUaUAUAUAAGUa -3'
miRNA:   3'- -UCAAUUUGGGAUUUCGaAUGUAUUCA- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.