miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28270 3' -40.4 NC_005902.1 + 1486 0.9 0.7624
Target:  5'- -uUUAAAUCCUAAGGCUUAUAUGAGUa -3'
miRNA:   3'- ucAAUUUGGGAUUUCGAAUGUAUUCA- -5'
28270 3' -40.4 NC_005902.1 + 12179 0.82 0.974455
Target:  5'- --aUAAAUCCUAAGGUUUAUAUAAGUg -3'
miRNA:   3'- ucaAUUUGGGAUUUCGAAUGUAUUCA- -5'
28270 3' -40.4 NC_005902.1 + 15362 1.11 0.090618
Target:  5'- gAGUUAAACCCUAAAGCUUACAUAAGUg -3'
miRNA:   3'- -UCAAUUUGGGAUUUCGAAUGUAUUCA- -5'
28270 3' -40.4 NC_005902.1 + 15871 0.77 0.999317
Target:  5'- -uUUAAAUUCUAAGGUUUAUAUGAGUa -3'
miRNA:   3'- ucAAUUUGGGAUUUCGAAUGUAUUCA- -5'
28270 3' -40.4 NC_005902.1 + 17643 0.77 0.998939
Target:  5'- -uUUAAACCCUAAGGCUUAUAc---- -3'
miRNA:   3'- ucAAUUUGGGAUUUCGAAUGUauuca -5'
28270 3' -40.4 NC_005902.1 + 17685 0.68 1
Target:  5'- --aUAAGCCUUAGGGUUUAaaggAUGAGUa -3'
miRNA:   3'- ucaAUUUGGGAUUUCGAAUg---UAUUCA- -5'
28270 3' -40.4 NC_005902.1 + 27881 0.66 1
Target:  5'- gGGUUAAugCCU-AAGCUauauaUGCAUuuGUu -3'
miRNA:   3'- -UCAAUUugGGAuUUCGA-----AUGUAuuCA- -5'
28270 3' -40.4 NC_005902.1 + 31221 0.69 1
Target:  5'- gAGUUAAAUCCUAAAGaguugucgaugaugcUUUGCAUAAu- -3'
miRNA:   3'- -UCAAUUUGGGAUUUC---------------GAAUGUAUUca -5'
28270 3' -40.4 NC_005902.1 + 31283 0.7 1
Target:  5'- aGGUUAAAUCUUAAAGUUUAUAUu--- -3'
miRNA:   3'- -UCAAUUUGGGAUUUCGAAUGUAuuca -5'
28270 3' -40.4 NC_005902.1 + 33085 0.76 0.999458
Target:  5'- -uUUAAAUCCUAAGGCUUAUAUAc-- -3'
miRNA:   3'- ucAAUUUGGGAUUUCGAAUGUAUuca -5'
28270 3' -40.4 NC_005902.1 + 34629 0.66 1
Target:  5'- ----cAACCCUuuaaauuccAAGGUUUAUAUAAGUa -3'
miRNA:   3'- ucaauUUGGGA---------UUUCGAAUGUAUUCA- -5'
28270 3' -40.4 NC_005902.1 + 36317 0.79 0.995177
Target:  5'- -uUUAAAUCCUAAGGCUUAUAcAAGUg -3'
miRNA:   3'- ucAAUUUGGGAUUUCGAAUGUaUUCA- -5'
28270 3' -40.4 NC_005902.1 + 37027 0.67 1
Target:  5'- -aUUAAAaUCUAAAGCUUAUGUAAGc -3'
miRNA:   3'- ucAAUUUgGGAUUUCGAAUGUAUUCa -5'
28270 3' -40.4 NC_005902.1 + 46259 0.79 0.995177
Target:  5'- -uUUAAAUCCUAAGGCUUAUAUAAa- -3'
miRNA:   3'- ucAAUUUGGGAUUUCGAAUGUAUUca -5'
28270 3' -40.4 NC_005902.1 + 48438 0.73 0.999991
Target:  5'- gGGUUAAaaaguauucACCCUAAGGCUUAUAc---- -3'
miRNA:   3'- -UCAAUU---------UGGGAUUUCGAAUGUauuca -5'
28270 3' -40.4 NC_005902.1 + 52445 0.72 0.999998
Target:  5'- -uUUAAAUCCUAGGaCUUAUAUAAGUg -3'
miRNA:   3'- ucAAUUUGGGAUUUcGAAUGUAUUCA- -5'
28270 3' -40.4 NC_005902.1 + 68999 0.71 1
Target:  5'- -uUUAAAUCCUAAGGCUUAUAc---- -3'
miRNA:   3'- ucAAUUUGGGAUUUCGAAUGUauuca -5'
28270 3' -40.4 NC_005902.1 + 72927 0.76 0.999666
Target:  5'- -uUUAAACCUUAAGGCUUAUAcuAGUa -3'
miRNA:   3'- ucAAUUUGGGAUUUCGAAUGUauUCA- -5'
28270 3' -40.4 NC_005902.1 + 75938 0.8 0.992229
Target:  5'- -uUUAAAUCCUAAAGCUUAUAcAAGUg -3'
miRNA:   3'- ucAAUUUGGGAUUUCGAAUGUaUUCA- -5'
28270 3' -40.4 NC_005902.1 + 78630 0.66 1
Target:  5'- -uUUAAAUuuUAAGGCUUAUAcAAGUa -3'
miRNA:   3'- ucAAUUUGggAUUUCGAAUGUaUUCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.