miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28270 3' -40.4 NC_005902.1 + 184520 0.71 1
Target:  5'- -uUUAAAUCCUAAGGCUUAUAc---- -3'
miRNA:   3'- ucAAUUUGGGAUUUCGAAUGUauuca -5'
28270 3' -40.4 NC_005902.1 + 184287 0.72 0.999998
Target:  5'- ----uAAUCCaUAAAGCUUAUAUAAGUa -3'
miRNA:   3'- ucaauUUGGG-AUUUCGAAUGUAUUCA- -5'
28270 3' -40.4 NC_005902.1 + 175696 0.8 0.990977
Target:  5'- -uUUAAAUCCUAAGGCUUAUAcGAGUa -3'
miRNA:   3'- ucAAUUUGGGAUUUCGAAUGUaUUCA- -5'
28270 3' -40.4 NC_005902.1 + 173342 0.72 0.999999
Target:  5'- cGUUAAAUCUUAAGGCUUAUAc---- -3'
miRNA:   3'- uCAAUUUGGGAUUUCGAAUGUauuca -5'
28270 3' -40.4 NC_005902.1 + 171142 0.76 0.999573
Target:  5'- -uUUAAAUuuUAAGGCUUAUAUAAGUg -3'
miRNA:   3'- ucAAUUUGggAUUUCGAAUGUAUUCA- -5'
28270 3' -40.4 NC_005902.1 + 171092 0.66 1
Target:  5'- ----uAAUCCUAAGGUUUAUAcGAGUg -3'
miRNA:   3'- ucaauUUGGGAUUUCGAAUGUaUUCA- -5'
28270 3' -40.4 NC_005902.1 + 170640 0.8 0.993338
Target:  5'- gAGUUAAACCCUAAGGCUU-CAc---- -3'
miRNA:   3'- -UCAAUUUGGGAUUUCGAAuGUauuca -5'
28270 3' -40.4 NC_005902.1 + 168363 0.96 0.48231
Target:  5'- -uUUAAACCCUAAGGCUUAUAUAAGUg -3'
miRNA:   3'- ucAAUUUGGGAUUUCGAAUGUAUUCA- -5'
28270 3' -40.4 NC_005902.1 + 163451 0.78 0.998393
Target:  5'- -uUUAAAUCCUAAGGCU-AUAUAAGUa -3'
miRNA:   3'- ucAAUUUGGGAUUUCGAaUGUAUUCA- -5'
28270 3' -40.4 NC_005902.1 + 162705 0.8 0.993338
Target:  5'- gGGUUAAACCCUAAuguuugcaauGCUUACAUAu-- -3'
miRNA:   3'- -UCAAUUUGGGAUUu---------CGAAUGUAUuca -5'
28270 3' -40.4 NC_005902.1 + 154716 0.8 0.990977
Target:  5'- aGGcUUAAAUCCUAAAGCUUAUAcAAGUg -3'
miRNA:   3'- -UC-AAUUUGGGAUUUCGAAUGUaUUCA- -5'
28270 3' -40.4 NC_005902.1 + 153131 0.69 1
Target:  5'- uGUUAAucucaGCaCCUAAAGCUU-UAUAGGUa -3'
miRNA:   3'- uCAAUU-----UG-GGAUUUCGAAuGUAUUCA- -5'
28270 3' -40.4 NC_005902.1 + 152918 0.71 1
Target:  5'- -uUUAAAUCCUAAGGCUUAUAc---- -3'
miRNA:   3'- ucAAUUUGGGAUUUCGAAUGUauuca -5'
28270 3' -40.4 NC_005902.1 + 151371 0.72 0.999999
Target:  5'- -uUUAAAUCCUAAAGCUUAUAc---- -3'
miRNA:   3'- ucAAUUUGGGAUUUCGAAUGUauuca -5'
28270 3' -40.4 NC_005902.1 + 149001 0.74 0.999966
Target:  5'- -uUUAAAaUCUAAAGCUUACAUAAGc -3'
miRNA:   3'- ucAAUUUgGGAUUUCGAAUGUAUUCa -5'
28270 3' -40.4 NC_005902.1 + 148149 0.7 1
Target:  5'- --cUAAAUCCUAAAGCU---GUAAGUg -3'
miRNA:   3'- ucaAUUUGGGAUUUCGAaugUAUUCA- -5'
28270 3' -40.4 NC_005902.1 + 143768 0.82 0.979831
Target:  5'- gGGUUAAGUCCUAAGGCUUAUAcAAGUg -3'
miRNA:   3'- -UCAAUUUGGGAUUUCGAAUGUaUUCA- -5'
28270 3' -40.4 NC_005902.1 + 143487 0.9 0.7624
Target:  5'- -uUUAAAUCCUAAGGCUUAUAUGAGUg -3'
miRNA:   3'- ucAAUUUGGGAUUUCGAAUGUAUUCA- -5'
28270 3' -40.4 NC_005902.1 + 142215 0.8 0.992229
Target:  5'- -uUUAAAUCCUAAGGCUUGCAcGAGc -3'
miRNA:   3'- ucAAUUUGGGAUUUCGAAUGUaUUCa -5'
28270 3' -40.4 NC_005902.1 + 139746 0.71 1
Target:  5'- -uUUAAAUCCUAAGGCUUAUAc---- -3'
miRNA:   3'- ucAAUUUGGGAUUUCGAAUGUauuca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.