miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28270 3' -40.4 NC_005902.1 + 15362 1.11 0.090618
Target:  5'- gAGUUAAACCCUAAAGCUUACAUAAGUg -3'
miRNA:   3'- -UCAAUUUGGGAUUUCGAAUGUAUUCA- -5'
28270 3' -40.4 NC_005902.1 + 100384 1 0.337776
Target:  5'- gGGUUAAAUCCUAAGGCUUAUAUGAGUg -3'
miRNA:   3'- -UCAAUUUGGGAUUUCGAAUGUAUUCA- -5'
28270 3' -40.4 NC_005902.1 + 139565 0.97 0.450916
Target:  5'- gAGUUAAACCCUAAGGCUUAUAUAcaAGUa -3'
miRNA:   3'- -UCAAUUUGGGAUUUCGAAUGUAU--UCA- -5'
28270 3' -40.4 NC_005902.1 + 168363 0.96 0.48231
Target:  5'- -uUUAAACCCUAAGGCUUAUAUAAGUg -3'
miRNA:   3'- ucAAUUUGGGAUUUCGAAUGUAUUCA- -5'
28270 3' -40.4 NC_005902.1 + 100723 0.93 0.5933
Target:  5'- gGGUUAAAUCCUAAGGUUUAUAUAAGUa -3'
miRNA:   3'- -UCAAUUUGGGAUUUCGAAUGUAUUCA- -5'
28270 3' -40.4 NC_005902.1 + 88950 0.92 0.650659
Target:  5'- aAGUUAAAUUCUAAGGCUUAUAUAAGUg -3'
miRNA:   3'- -UCAAUUUGGGAUUUCGAAUGUAUUCA- -5'
28270 3' -40.4 NC_005902.1 + 143487 0.9 0.7624
Target:  5'- -uUUAAAUCCUAAGGCUUAUAUGAGUg -3'
miRNA:   3'- ucAAUUUGGGAUUUCGAAUGUAUUCA- -5'
28270 3' -40.4 NC_005902.1 + 1486 0.9 0.7624
Target:  5'- -uUUAAAUCCUAAGGCUUAUAUGAGUa -3'
miRNA:   3'- ucAAUUUGGGAUUUCGAAUGUAUUCA- -5'
28270 3' -40.4 NC_005902.1 + 135653 0.9 0.7624
Target:  5'- -uUUAAAUCCUAAGGCUUAUAUGAGUg -3'
miRNA:   3'- ucAAUUUGGGAUUUCGAAUGUAUUCA- -5'
28270 3' -40.4 NC_005902.1 + 112213 0.86 0.891952
Target:  5'- aGGUUAAAUCCUGAAGUaUAUAUAAGUa -3'
miRNA:   3'- -UCAAUUUGGGAUUUCGaAUGUAUUCA- -5'
28270 3' -40.4 NC_005902.1 + 82112 0.86 0.891952
Target:  5'- cAGUUuucAAUCCUAAGGCUUAUAUAAGUg -3'
miRNA:   3'- -UCAAu--UUGGGAUUUCGAAUGUAUUCA- -5'
28270 3' -40.4 NC_005902.1 + 88504 0.86 0.899315
Target:  5'- -uUUAAACCCcGAGGCUUAUAUGAGUg -3'
miRNA:   3'- ucAAUUUGGGaUUUCGAAUGUAUUCA- -5'
28270 3' -40.4 NC_005902.1 + 136415 0.85 0.913162
Target:  5'- -uUUAAcCCCUAAGGCUUAUAUAAGUa -3'
miRNA:   3'- ucAAUUuGGGAUUUCGAAUGUAUUCA- -5'
28270 3' -40.4 NC_005902.1 + 116778 0.82 0.971406
Target:  5'- -uUUAAAUUCUAAGGCUUAUAUAAGUg -3'
miRNA:   3'- ucAAUUUGGGAUUUCGAAUGUAUUCA- -5'
28270 3' -40.4 NC_005902.1 + 12179 0.82 0.974455
Target:  5'- --aUAAAUCCUAAGGUUUAUAUAAGUg -3'
miRNA:   3'- ucaAUUUGGGAUUUCGAAUGUAUUCA- -5'
28270 3' -40.4 NC_005902.1 + 131071 0.82 0.974455
Target:  5'- gGGUUAAAUUCUAAGGCUUAUAcAAGUa -3'
miRNA:   3'- -UCAAUUUGGGAUUUCGAAUGUaUUCA- -5'
28270 3' -40.4 NC_005902.1 + 143768 0.82 0.979831
Target:  5'- gGGUUAAGUCCUAAGGCUUAUAcAAGUg -3'
miRNA:   3'- -UCAAUUUGGGAUUUCGAAUGUaUUCA- -5'
28270 3' -40.4 NC_005902.1 + 175696 0.8 0.990977
Target:  5'- -uUUAAAUCCUAAGGCUUAUAcGAGUa -3'
miRNA:   3'- ucAAUUUGGGAUUUCGAAUGUaUUCA- -5'
28270 3' -40.4 NC_005902.1 + 154716 0.8 0.990977
Target:  5'- aGGcUUAAAUCCUAAAGCUUAUAcAAGUg -3'
miRNA:   3'- -UC-AAUUUGGGAUUUCGAAUGUaUUCA- -5'
28270 3' -40.4 NC_005902.1 + 137570 0.8 0.990977
Target:  5'- -uUUGAAUCCUAAAGCUUAUAUAAa- -3'
miRNA:   3'- ucAAUUUGGGAUUUCGAAUGUAUUca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.