miRNA display CGI


Results 21 - 40 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28270 3' -40.4 NC_005902.1 + 80286 0.73 0.999996
Target:  5'- uAGUU-GACCUUGAGGU--ACAUGAGUa -3'
miRNA:   3'- -UCAAuUUGGGAUUUCGaaUGUAUUCA- -5'
28270 3' -40.4 NC_005902.1 + 81223 0.74 0.999966
Target:  5'- gGGUUAAACUgUAAGaCUUAUAUAAGUa -3'
miRNA:   3'- -UCAAUUUGGgAUUUcGAAUGUAUUCA- -5'
28270 3' -40.4 NC_005902.1 + 82112 0.86 0.891952
Target:  5'- cAGUUuucAAUCCUAAGGCUUAUAUAAGUg -3'
miRNA:   3'- -UCAAu--UUGGGAUUUCGAAUGUAUUCA- -5'
28270 3' -40.4 NC_005902.1 + 84876 0.73 0.999991
Target:  5'- -aUUAAAUCUUAAGGCUUAaAUGAGUg -3'
miRNA:   3'- ucAAUUUGGGAUUUCGAAUgUAUUCA- -5'
28270 3' -40.4 NC_005902.1 + 88504 0.86 0.899315
Target:  5'- -uUUAAACCCcGAGGCUUAUAUGAGUg -3'
miRNA:   3'- ucAAUUUGGGaUUUCGAAUGUAUUCA- -5'
28270 3' -40.4 NC_005902.1 + 88823 0.67 1
Target:  5'- aGGaUUAAAUCCUAAAGUUUAUAUu--- -3'
miRNA:   3'- -UC-AAUUUGGGAUUUCGAAUGUAuuca -5'
28270 3' -40.4 NC_005902.1 + 88950 0.92 0.650659
Target:  5'- aAGUUAAAUUCUAAGGCUUAUAUAAGUg -3'
miRNA:   3'- -UCAAUUUGGGAUUUCGAAUGUAUUCA- -5'
28270 3' -40.4 NC_005902.1 + 90704 0.78 0.998042
Target:  5'- -uUUAAAUCCUAAGGCUUAUAcaauUGAGUg -3'
miRNA:   3'- ucAAUUUGGGAUUUCGAAUGU----AUUCA- -5'
28270 3' -40.4 NC_005902.1 + 92637 0.66 1
Target:  5'- gGGaUUAAAUCCUAAAGUUUAUAc---- -3'
miRNA:   3'- -UC-AAUUUGGGAUUUCGAAUGUauuca -5'
28270 3' -40.4 NC_005902.1 + 93366 0.74 0.999966
Target:  5'- -uUUAAAUCCUAAAGUUUAUAUAAa- -3'
miRNA:   3'- ucAAUUUGGGAUUUCGAAUGUAUUca -5'
28270 3' -40.4 NC_005902.1 + 95460 0.79 0.995177
Target:  5'- -uUUAAAUCCUAAGGCUUAUAcAAGUa -3'
miRNA:   3'- ucAAUUUGGGAUUUCGAAUGUaUUCA- -5'
28270 3' -40.4 NC_005902.1 + 100280 0.71 1
Target:  5'- -uUUAAAUCCUAAGGCUUAUAc---- -3'
miRNA:   3'- ucAAUUUGGGAUUUCGAAUGUauuca -5'
28270 3' -40.4 NC_005902.1 + 100384 1 0.337776
Target:  5'- gGGUUAAAUCCUAAGGCUUAUAUGAGUg -3'
miRNA:   3'- -UCAAUUUGGGAUUUCGAAUGUAUUCA- -5'
28270 3' -40.4 NC_005902.1 + 100723 0.93 0.5933
Target:  5'- gGGUUAAAUCCUAAGGUUUAUAUAAGUa -3'
miRNA:   3'- -UCAAUUUGGGAUUUCGAAUGUAUUCA- -5'
28270 3' -40.4 NC_005902.1 + 103889 0.66 1
Target:  5'- -uUUAAAUCCUAAAGUUUAUAc---- -3'
miRNA:   3'- ucAAUUUGGGAUUUCGAAUGUauuca -5'
28270 3' -40.4 NC_005902.1 + 107376 0.7 1
Target:  5'- -uUUAAAUCCUAGGGCUUAUAc---- -3'
miRNA:   3'- ucAAUUUGGGAUUUCGAAUGUauuca -5'
28270 3' -40.4 NC_005902.1 + 112213 0.86 0.891952
Target:  5'- aGGUUAAAUCCUGAAGUaUAUAUAAGUa -3'
miRNA:   3'- -UCAAUUUGGGAUUUCGaAUGUAUUCA- -5'
28270 3' -40.4 NC_005902.1 + 114376 0.68 1
Target:  5'- gAGUUAaggauuAACCUuucaaaacaUAAAGCUUAUAUAAGc -3'
miRNA:   3'- -UCAAU------UUGGG---------AUUUCGAAUGUAUUCa -5'
28270 3' -40.4 NC_005902.1 + 115192 0.67 1
Target:  5'- gGGUUAAACCC-AAAGUacACAU-GGUa -3'
miRNA:   3'- -UCAAUUUGGGaUUUCGaaUGUAuUCA- -5'
28270 3' -40.4 NC_005902.1 + 116677 0.67 1
Target:  5'- ----uAACaCCUGAAGCUUAUAUAGu- -3'
miRNA:   3'- ucaauUUG-GGAUUUCGAAUGUAUUca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.