Results 1 - 20 of 29 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28270 | 5' | -44.1 | NC_005902.1 | + | 1518 | 0.78 | 0.955189 |
Target: 5'- aUAAACAAGUaUAAGCCUUAGGaUUUAa -3' miRNA: 3'- -GUUUGUUCAcAUUCGGAAUCCcAAAU- -5' |
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28270 | 5' | -44.1 | NC_005902.1 | + | 12680 | 0.7 | 0.999893 |
Target: 5'- aCAuACAAGUGagcauagugacaguaUAAGCCUUAagauuuaacGGGUUUAa -3' miRNA: 3'- -GUuUGUUCAC---------------AUUCGGAAU---------CCCAAAU- -5' |
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28270 | 5' | -44.1 | NC_005902.1 | + | 15396 | 1.08 | 0.047789 |
Target: 5'- gCAAACAAGUGUAAGCCUUAGGGUUUAa -3' miRNA: 3'- -GUUUGUUCACAUUCGGAAUCCCAAAU- -5' |
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28270 | 5' | -44.1 | NC_005902.1 | + | 17685 | 0.7 | 0.999881 |
Target: 5'- ---------aUAAGCCUUAGGGUUUAa -3' miRNA: 3'- guuuguucacAUUCGGAAUCCCAAAU- -5' |
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28270 | 5' | -44.1 | NC_005902.1 | + | 31439 | 0.68 | 0.999989 |
Target: 5'- aCAAACAAGUGUAgcaagugaguauauAGCUUagguaaAGGGUUa- -3' miRNA: 3'- -GUUUGUUCACAU--------------UCGGAa-----UCCCAAau -5' |
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28270 | 5' | -44.1 | NC_005902.1 | + | 33120 | 0.73 | 0.996092 |
Target: 5'- uGAAUAAGUaUAAGCCUUAGGaUUUAa -3' miRNA: 3'- gUUUGUUCAcAUUCGGAAUCCcAAAU- -5' |
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28270 | 5' | -44.1 | NC_005902.1 | + | 34667 | 0.67 | 0.999995 |
Target: 5'- gCAAAUGAGUaUAAGCUUUAGGaUUUAa -3' miRNA: 3'- -GUUUGUUCAcAUUCGGAAUCCcAAAU- -5' |
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28270 | 5' | -44.1 | NC_005902.1 | + | 36185 | 0.67 | 0.999998 |
Target: 5'- aUAAACAAGUGUAgcaagugaguauaAGCUUUAGGu---- -3' miRNA: 3'- -GUUUGUUCACAU-------------UCGGAAUCCcaaau -5' |
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28270 | 5' | -44.1 | NC_005902.1 | + | 43867 | 0.66 | 1 |
Target: 5'- aCAAACAAGUGU-AGCaaauaaguauauagCUUAGGuGUUa- -3' miRNA: 3'- -GUUUGUUCACAuUCG--------------GAAUCC-CAAau -5' |
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28270 | 5' | -44.1 | NC_005902.1 | + | 46291 | 0.8 | 0.905543 |
Target: 5'- uCAAACAAGUaUAAGCCUUAGGaUUUAa -3' miRNA: 3'- -GUUUGUUCAcAUUCGGAAUCCcAAAU- -5' |
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28270 | 5' | -44.1 | NC_005902.1 | + | 46481 | 0.7 | 0.999881 |
Target: 5'- ---------aUAAGCCUUAGGGUUUAa -3' miRNA: 3'- guuuguucacAUUCGGAAUCCCAAAU- -5' |
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28270 | 5' | -44.1 | NC_005902.1 | + | 65664 | 0.69 | 0.99995 |
Target: 5'- -uAAUAAGUaUAAGCCUUAGGaUUUAa -3' miRNA: 3'- guUUGUUCAcAUUCGGAAUCCcAAAU- -5' |
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28270 | 5' | -44.1 | NC_005902.1 | + | 78662 | 0.7 | 0.999663 |
Target: 5'- gCAAACAAGUaUAAGCCcUAGGaUUUAa -3' miRNA: 3'- -GUUUGUUCAcAUUCGGaAUCCcAAAU- -5' |
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28270 | 5' | -44.1 | NC_005902.1 | + | 85758 | 0.75 | 0.983204 |
Target: 5'- gCAAAUAAGUaUAAGCCUUAGGaUUUAa -3' miRNA: 3'- -GUUUGUUCAcAUUCGGAAUCCcAAAU- -5' |
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28270 | 5' | -44.1 | NC_005902.1 | + | 88587 | 0.66 | 0.999999 |
Target: 5'- aCAAACAAGUGUAauaAGUaaguauagCUUAGGuGUUa- -3' miRNA: 3'- -GUUUGUUCACAU---UCG--------GAAUCC-CAAau -5' |
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28270 | 5' | -44.1 | NC_005902.1 | + | 107163 | 0.73 | 0.997572 |
Target: 5'- aUAAACAAGUGUAgcaaaugaguauauAGCUUaAGGGUUa- -3' miRNA: 3'- -GUUUGUUCACAU--------------UCGGAaUCCCAAau -5' |
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28270 | 5' | -44.1 | NC_005902.1 | + | 117038 | 0.75 | 0.988648 |
Target: 5'- gCAAAUAGGUaUAAGCCUUAGGaUUUAa -3' miRNA: 3'- -GUUUGUUCAcAUUCGGAAUCCcAAAU- -5' |
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28270 | 5' | -44.1 | NC_005902.1 | + | 136447 | 0.76 | 0.973139 |
Target: 5'- gUAAACAAGUaUAAGCCUUAGuGUUUAa -3' miRNA: 3'- -GUUUGUUCAcAUUCGGAAUCcCAAAU- -5' |
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28270 | 5' | -44.1 | NC_005902.1 | + | 137589 | 0.86 | 0.633648 |
Target: 5'- aUAAACAAGUaUAAGCCUUAGGGUg-- -3' miRNA: 3'- -GUUUGUUCAcAUUCGGAAUCCCAaau -5' |
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28270 | 5' | -44.1 | NC_005902.1 | + | 153110 | 0.68 | 0.999993 |
Target: 5'- uGAACAAGUaUAAGUUUUAGGuGUUa- -3' miRNA: 3'- gUUUGUUCAcAUUCGGAAUCC-CAAau -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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