miRNA display CGI


Results 1 - 20 of 29 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28270 5' -44.1 NC_005902.1 + 107163 0.73 0.997572
Target:  5'- aUAAACAAGUGUAgcaaaugaguauauAGCUUaAGGGUUa- -3'
miRNA:   3'- -GUUUGUUCACAU--------------UCGGAaUCCCAAau -5'
28270 5' -44.1 NC_005902.1 + 33120 0.73 0.996092
Target:  5'- uGAAUAAGUaUAAGCCUUAGGaUUUAa -3'
miRNA:   3'- gUUUGUUCAcAUUCGGAAUCCcAAAU- -5'
28270 5' -44.1 NC_005902.1 + 161878 0.74 0.991436
Target:  5'- gCAAACAAGUaUGAGCCUUGgauuuaauGGGUUa- -3'
miRNA:   3'- -GUUUGUUCAcAUUCGGAAU--------CCCAAau -5'
28270 5' -44.1 NC_005902.1 + 158170 0.76 0.973139
Target:  5'- gCAAACAAGUaUAAGCCUUaagauuuaaAGGGUUa- -3'
miRNA:   3'- -GUUUGUUCAcAUUCGGAA---------UCCCAAau -5'
28270 5' -44.1 NC_005902.1 + 136447 0.76 0.973139
Target:  5'- gUAAACAAGUaUAAGCCUUAGuGUUUAa -3'
miRNA:   3'- -GUUUGUUCAcAUUCGGAAUCcCAAAU- -5'
28270 5' -44.1 NC_005902.1 + 168395 0.91 0.392111
Target:  5'- aCAAAUAAGUaUAAGCCUUAGGGUUUAa -3'
miRNA:   3'- -GUUUGUUCAcAUUCGGAAUCCCAAAU- -5'
28270 5' -44.1 NC_005902.1 + 36185 0.67 0.999998
Target:  5'- aUAAACAAGUGUAgcaagugaguauaAGCUUUAGGu---- -3'
miRNA:   3'- -GUUUGUUCACAU-------------UCGGAAUCCcaaau -5'
28270 5' -44.1 NC_005902.1 + 177404 0.67 0.999997
Target:  5'- gCAAACAAGUaUAAGCCaUaagauuuaaAGGGUUa- -3'
miRNA:   3'- -GUUUGUUCAcAUUCGGaA---------UCCCAAau -5'
28270 5' -44.1 NC_005902.1 + 65664 0.69 0.99995
Target:  5'- -uAAUAAGUaUAAGCCUUAGGaUUUAa -3'
miRNA:   3'- guUUGUUCAcAUUCGGAAUCCcAAAU- -5'
28270 5' -44.1 NC_005902.1 + 12680 0.7 0.999893
Target:  5'- aCAuACAAGUGagcauagugacaguaUAAGCCUUAagauuuaacGGGUUUAa -3'
miRNA:   3'- -GUuUGUUCAC---------------AUUCGGAAU---------CCCAAAU- -5'
28270 5' -44.1 NC_005902.1 + 163482 0.72 0.998097
Target:  5'- gCAAACAAGUau-AGCCUUAGGaUUUAa -3'
miRNA:   3'- -GUUUGUUCAcauUCGGAAUCCcAAAU- -5'
28270 5' -44.1 NC_005902.1 + 78662 0.7 0.999663
Target:  5'- gCAAACAAGUaUAAGCCcUAGGaUUUAa -3'
miRNA:   3'- -GUUUGUUCAcAUUCGGaAUCCcAAAU- -5'
28270 5' -44.1 NC_005902.1 + 34667 0.67 0.999995
Target:  5'- gCAAAUGAGUaUAAGCUUUAGGaUUUAa -3'
miRNA:   3'- -GUUUGUUCAcAUUCGGAAUCCcAAAU- -5'
28270 5' -44.1 NC_005902.1 + 170681 0.73 0.996092
Target:  5'- -------aUGUAAGCUUUAGGGUUUAa -3'
miRNA:   3'- guuuguucACAUUCGGAAUCCCAAAU- -5'
28270 5' -44.1 NC_005902.1 + 137589 0.86 0.633648
Target:  5'- aUAAACAAGUaUAAGCCUUAGGGUg-- -3'
miRNA:   3'- -GUUUGUUCAcAUUCGGAAUCCCAaau -5'
28270 5' -44.1 NC_005902.1 + 15396 1.08 0.047789
Target:  5'- gCAAACAAGUGUAAGCCUUAGGGUUUAa -3'
miRNA:   3'- -GUUUGUUCACAUUCGGAAUCCCAAAU- -5'
28270 5' -44.1 NC_005902.1 + 46291 0.8 0.905543
Target:  5'- uCAAACAAGUaUAAGCCUUAGGaUUUAa -3'
miRNA:   3'- -GUUUGUUCAcAUUCGGAAUCCcAAAU- -5'
28270 5' -44.1 NC_005902.1 + 1518 0.78 0.955189
Target:  5'- aUAAACAAGUaUAAGCCUUAGGaUUUAa -3'
miRNA:   3'- -GUUUGUUCAcAUUCGGAAUCCcAAAU- -5'
28270 5' -44.1 NC_005902.1 + 88587 0.66 0.999999
Target:  5'- aCAAACAAGUGUAauaAGUaaguauagCUUAGGuGUUa- -3'
miRNA:   3'- -GUUUGUUCACAU---UCG--------GAAUCC-CAAau -5'
28270 5' -44.1 NC_005902.1 + 157106 0.69 0.99991
Target:  5'- gCAAAUAAGUaUAAGCUUUAGGaUUUAa -3'
miRNA:   3'- -GUUUGUUCAcAUUCGGAAUCCcAAAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.