Results 41 - 60 of 100 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28271 | 3' | -44.5 | NC_005902.1 | + | 71259 | 0.68 | 0.999988 |
Target: 5'- aCCCUUUAACuCU--ACAUCGUCAcCGa -3' miRNA: 3'- -GGGAAAUUGuGAcgUGUAGUAGUuGU- -5' |
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28271 | 3' | -44.5 | NC_005902.1 | + | 74841 | 0.66 | 0.999999 |
Target: 5'- uUCCUUaucACAacaaUGUaaaGCGUCAUCAACAa -3' miRNA: 3'- -GGGAAau-UGUg---ACG---UGUAGUAGUUGU- -5' |
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28271 | 3' | -44.5 | NC_005902.1 | + | 75833 | 0.73 | 0.997995 |
Target: 5'- aCCCUUUAACucaUGCA--UCAUCAAUg -3' miRNA: 3'- -GGGAAAUUGug-ACGUguAGUAGUUGu -5' |
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28271 | 3' | -44.5 | NC_005902.1 | + | 78151 | 0.74 | 0.9939 |
Target: 5'- aUCCUUUAacuuuACACUGUcaucaacaacgcuuaGCAUCAUCAAUg -3' miRNA: 3'- -GGGAAAU-----UGUGACG---------------UGUAGUAGUUGu -5' |
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28271 | 3' | -44.5 | NC_005902.1 | + | 78757 | 0.72 | 0.999089 |
Target: 5'- aCgCUUUAACcCUGCAUuGUUAUCAACAa -3' miRNA: 3'- -GgGAAAUUGuGACGUG-UAGUAGUUGU- -5' |
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28271 | 3' | -44.5 | NC_005902.1 | + | 81354 | 0.74 | 0.992481 |
Target: 5'- aCCCUUUAACuCUaCAcCAUUAUCAACAc -3' miRNA: 3'- -GGGAAAUUGuGAcGU-GUAGUAGUUGU- -5' |
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28271 | 3' | -44.5 | NC_005902.1 | + | 81927 | 0.75 | 0.990013 |
Target: 5'- aCCCUUUAACuCcGCaACAUCAUUAAUAc -3' miRNA: 3'- -GGGAAAUUGuGaCG-UGUAGUAGUUGU- -5' |
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28271 | 3' | -44.5 | NC_005902.1 | + | 84065 | 0.84 | 0.741276 |
Target: 5'- aUCCUUUAACuCUGCACuAUCAUCAAUg -3' miRNA: 3'- -GGGAAAUUGuGACGUG-UAGUAGUUGu -5' |
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28271 | 3' | -44.5 | NC_005902.1 | + | 85402 | 0.69 | 0.999921 |
Target: 5'- aCCCUUUAACuaauuuaUGU-CAUCAUUGACAa -3' miRNA: 3'- -GGGAAAUUGug-----ACGuGUAGUAGUUGU- -5' |
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28271 | 3' | -44.5 | NC_005902.1 | + | 85553 | 0.68 | 0.999988 |
Target: 5'- aCCCUUUAAUuccaaaCACAUCAcCAACAa -3' miRNA: 3'- -GGGAAAUUGugac--GUGUAGUaGUUGU- -5' |
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28271 | 3' | -44.5 | NC_005902.1 | + | 86340 | 0.68 | 0.999988 |
Target: 5'- aUCCUUUAAUucCUaagGCGUCAUCAACAa -3' miRNA: 3'- -GGGAAAUUGu-GAcg-UGUAGUAGUUGU- -5' |
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28271 | 3' | -44.5 | NC_005902.1 | + | 87062 | 0.66 | 0.999999 |
Target: 5'- cCCCUUaacuucuaaGGCAUUGUuaaugauacuuuGCAUCAUUAACAa -3' miRNA: 3'- -GGGAAa--------UUGUGACG------------UGUAGUAGUUGU- -5' |
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28271 | 3' | -44.5 | NC_005902.1 | + | 87184 | 0.66 | 1 |
Target: 5'- aCCUUUUAACACuuaUGCAUAUaCAaacaagagCAGCAa -3' miRNA: 3'- -GGGAAAUUGUG---ACGUGUA-GUa-------GUUGU- -5' |
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28271 | 3' | -44.5 | NC_005902.1 | + | 88893 | 0.78 | 0.955972 |
Target: 5'- aUCCUUUAACua--CACAUCAUCGACAa -3' miRNA: 3'- -GGGAAAUUGugacGUGUAGUAGUUGU- -5' |
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28271 | 3' | -44.5 | NC_005902.1 | + | 89961 | 0.72 | 0.998632 |
Target: 5'- aCCCUUUAACucCUaagGCAUUAUCAACAa -3' miRNA: 3'- -GGGAAAUUGu-GAcg-UGUAGUAGUUGU- -5' |
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28271 | 3' | -44.5 | NC_005902.1 | + | 90126 | 0.66 | 1 |
Target: 5'- aCCCUUUAAUuCUaUAuCGUCAUCAAUg -3' miRNA: 3'- -GGGAAAUUGuGAcGU-GUAGUAGUUGu -5' |
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28271 | 3' | -44.5 | NC_005902.1 | + | 90489 | 0.71 | 0.999528 |
Target: 5'- aCCCUUUAACuCUuaagGCAUCAUCGAUg -3' miRNA: 3'- -GGGAAAUUGuGAcg--UGUAGUAGUUGu -5' |
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28271 | 3' | -44.5 | NC_005902.1 | + | 91308 | 0.66 | 1 |
Target: 5'- aCCUUUUAACACUuaaacuauauacGCAC-UCAUUuguACAu -3' miRNA: 3'- -GGGAAAUUGUGA------------CGUGuAGUAGu--UGU- -5' |
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28271 | 3' | -44.5 | NC_005902.1 | + | 94764 | 0.69 | 0.999961 |
Target: 5'- cCCCUUUAcuucACAUUGUuauugaugauacaaaGCAUCAUUAAUg -3' miRNA: 3'- -GGGAAAU----UGUGACG---------------UGUAGUAGUUGu -5' |
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28271 | 3' | -44.5 | NC_005902.1 | + | 94951 | 0.79 | 0.920594 |
Target: 5'- aCCCUUUAACuccaCACAUCAUCAAUAa -3' miRNA: 3'- -GGGAAAUUGugacGUGUAGUAGUUGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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