miRNA display CGI


Results 21 - 40 of 100 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28271 3' -44.5 NC_005902.1 + 36310 0.7 0.99977
Target:  5'- aCCCUUUAACACa-UACAUCAUUuAUAa -3'
miRNA:   3'- -GGGAAAUUGUGacGUGUAGUAGuUGU- -5'
28271 3' -44.5 NC_005902.1 + 37318 0.68 0.999988
Target:  5'- aCCCUUUAACuccaUGU-UGUCAUCAAUAa -3'
miRNA:   3'- -GGGAAAUUGug--ACGuGUAGUAGUUGU- -5'
28271 3' -44.5 NC_005902.1 + 37871 0.66 1
Target:  5'- aCCCUUUAAauccuagcauuCGCUGCAC-UUA-CAGCu -3'
miRNA:   3'- -GGGAAAUU-----------GUGACGUGuAGUaGUUGu -5'
28271 3' -44.5 NC_005902.1 + 39348 0.67 0.999997
Target:  5'- aCCCUUUAACuCUaCAuUGUCAUCAAUg -3'
miRNA:   3'- -GGGAAAUUGuGAcGU-GUAGUAGUUGu -5'
28271 3' -44.5 NC_005902.1 + 43916 0.73 0.995961
Target:  5'- aCUCUUUAACACcuaaaGCAUCAUCGAUg -3'
miRNA:   3'- -GGGAAAUUGUGacg--UGUAGUAGUUGu -5'
28271 3' -44.5 NC_005902.1 + 48319 0.74 0.994775
Target:  5'- aCCCUUUAAUuccuuuaUGCaucaaugaugcuaauGCAUCAUCAGCAa -3'
miRNA:   3'- -GGGAAAUUGug-----ACG---------------UGUAGUAGUUGU- -5'
28271 3' -44.5 NC_005902.1 + 48379 0.66 1
Target:  5'- aCCCUUUAACACcuaaguuaUGUACuuauUCAAUAu -3'
miRNA:   3'- -GGGAAAUUGUG--------ACGUGuaguAGUUGU- -5'
28271 3' -44.5 NC_005902.1 + 49699 0.7 0.999892
Target:  5'- aCCUUUUAACucuaaacauGCUGUuacugauauguuaGCAUUAUCAGCAc -3'
miRNA:   3'- -GGGAAAUUG---------UGACG-------------UGUAGUAGUUGU- -5'
28271 3' -44.5 NC_005902.1 + 49982 0.73 0.997592
Target:  5'- aCCCUUUAACucCUaagGCAUCAUCAAUAa -3'
miRNA:   3'- -GGGAAAUUGu-GAcg-UGUAGUAGUUGU- -5'
28271 3' -44.5 NC_005902.1 + 52841 0.66 0.999999
Target:  5'- aUCCUUUAACuccauaccgUUGUuaaugacauaaaACGUCAUCAACAa -3'
miRNA:   3'- -GGGAAAUUGu--------GACG------------UGUAGUAGUUGU- -5'
28271 3' -44.5 NC_005902.1 + 54870 0.68 0.999983
Target:  5'- aCCCUUUAACACcuaaGC-UAUUAcUCAACAc -3'
miRNA:   3'- -GGGAAAUUGUGa---CGuGUAGU-AGUUGU- -5'
28271 3' -44.5 NC_005902.1 + 54991 0.66 1
Target:  5'- aCCCUUUAACccCUaagGCAUCAUUAAUAa -3'
miRNA:   3'- -GGGAAAUUGu-GAcg-UGUAGUAGUUGU- -5'
28271 3' -44.5 NC_005902.1 + 58601 0.74 0.992481
Target:  5'- aCCCUUUAACuCUaCGCAUCAUUGAUg -3'
miRNA:   3'- -GGGAAAUUGuGAcGUGUAGUAGUUGu -5'
28271 3' -44.5 NC_005902.1 + 61523 0.75 0.988562
Target:  5'- aCCCUUUAAUACUuaaGCuauauaugaGCAUCGUUGACAa -3'
miRNA:   3'- -GGGAAAUUGUGA---CG---------UGUAGUAGUUGU- -5'
28271 3' -44.5 NC_005902.1 + 63108 0.7 0.99977
Target:  5'- aCCCUUUAACuuuuaagGCAuCAUCAUUGAUAu -3'
miRNA:   3'- -GGGAAAUUGuga----CGU-GUAGUAGUUGU- -5'
28271 3' -44.5 NC_005902.1 + 63167 0.73 0.995961
Target:  5'- aCCCUUUAAUucCUaagGCAUCAUCAACAa -3'
miRNA:   3'- -GGGAAAUUGu-GAcg-UGUAGUAGUUGU- -5'
28271 3' -44.5 NC_005902.1 + 67063 0.73 0.996583
Target:  5'- aCCCUUUAACuc--CACAuuaUCAUCAACAa -3'
miRNA:   3'- -GGGAAAUUGugacGUGU---AGUAGUUGU- -5'
28271 3' -44.5 NC_005902.1 + 67424 0.71 0.999626
Target:  5'- aUCCUUUAACuCUaUACuGUCAUCAACAa -3'
miRNA:   3'- -GGGAAAUUGuGAcGUG-UAGUAGUUGU- -5'
28271 3' -44.5 NC_005902.1 + 67779 0.7 0.99977
Target:  5'- aUCCUUUAACuCUaCACuGUCAUCAAUAa -3'
miRNA:   3'- -GGGAAAUUGuGAcGUG-UAGUAGUUGU- -5'
28271 3' -44.5 NC_005902.1 + 68237 0.74 0.995249
Target:  5'- aCCCUUUAACuCUGCA--UCAUUAAUg -3'
miRNA:   3'- -GGGAAAUUGuGACGUguAGUAGUUGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.