miRNA display CGI


Results 1 - 20 of 100 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28271 3' -44.5 NC_005902.1 + 1555 0.73 0.995961
Target:  5'- aCCCUUUAACuu--CACAUCAUCAuCAa -3'
miRNA:   3'- -GGGAAAUUGugacGUGUAGUAGUuGU- -5'
28271 3' -44.5 NC_005902.1 + 1580 0.66 1
Target:  5'- ----aUGAUGCUuCACAUCAUUAACAa -3'
miRNA:   3'- gggaaAUUGUGAcGUGUAGUAGUUGU- -5'
28271 3' -44.5 NC_005902.1 + 4542 0.68 0.999994
Target:  5'- aCCCUUUAACuuCUaaaGCAUUGUCGAUAa -3'
miRNA:   3'- -GGGAAAUUGu-GAcg-UGUAGUAGUUGU- -5'
28271 3' -44.5 NC_005902.1 + 4898 0.68 0.999974
Target:  5'- aCCCUUUAacucucaaagcauuACAgUGauauaaaGCGUCAUCAAUAa -3'
miRNA:   3'- -GGGAAAU--------------UGUgACg------UGUAGUAGUUGU- -5'
28271 3' -44.5 NC_005902.1 + 8351 0.67 0.999996
Target:  5'- cUCCUaaAACAUUGUcgaugacauaaaACAUCAUUAACAa -3'
miRNA:   3'- -GGGAaaUUGUGACG------------UGUAGUAGUUGU- -5'
28271 3' -44.5 NC_005902.1 + 10060 0.87 0.578261
Target:  5'- aCCCUUUAACuCUGCGCuGUUAUCAACAc -3'
miRNA:   3'- -GGGAAAUUGuGACGUG-UAGUAGUUGU- -5'
28271 3' -44.5 NC_005902.1 + 10982 1.14 0.025029
Target:  5'- aCCCUUUAACACUGCACAUCAUCAACAa -3'
miRNA:   3'- -GGGAAAUUGUGACGUGUAGUAGUUGU- -5'
28271 3' -44.5 NC_005902.1 + 11127 0.69 0.999914
Target:  5'- aCCCUuuaaauccauguugUUGAUGCUuuGCAUCAUCAAUg -3'
miRNA:   3'- -GGGA--------------AAUUGUGAcgUGUAGUAGUUGu -5'
28271 3' -44.5 NC_005902.1 + 16113 0.67 0.999998
Target:  5'- aCCCUUUAACcCcaaaCACGUCGUCggUg -3'
miRNA:   3'- -GGGAAAUUGuGac--GUGUAGUAGuuGu -5'
28271 3' -44.5 NC_005902.1 + 20125 0.7 0.999895
Target:  5'- aCCCUUUAACuu--CACAUCAUUGAUg -3'
miRNA:   3'- -GGGAAAUUGugacGUGUAGUAGUUGu -5'
28271 3' -44.5 NC_005902.1 + 20183 0.75 0.986952
Target:  5'- aCCCUUUA--ACUGCACAUUguuAUCAAUg -3'
miRNA:   3'- -GGGAAAUugUGACGUGUAG---UAGUUGu -5'
28271 3' -44.5 NC_005902.1 + 23357 0.7 0.999792
Target:  5'- aCCCUUUAAUucuauguuguuaaUGCAgUGUCAUCAACAa -3'
miRNA:   3'- -GGGAAAUUGug-----------ACGU-GUAGUAGUUGU- -5'
28271 3' -44.5 NC_005902.1 + 24051 0.7 0.99977
Target:  5'- aCCCUUUAAUuCUaCgACAUCAUCAAUg -3'
miRNA:   3'- -GGGAAAUUGuGAcG-UGUAGUAGUUGu -5'
28271 3' -44.5 NC_005902.1 + 26455 0.69 0.999956
Target:  5'- ----aUGACACUuuGCAUCAUUAACAa -3'
miRNA:   3'- gggaaAUUGUGAcgUGUAGUAGUUGU- -5'
28271 3' -44.5 NC_005902.1 + 29027 0.66 0.999999
Target:  5'- uUCUUUGACucuaaauauguuACUGaugaugcauuaGCAUCAUCAGCAa -3'
miRNA:   3'- gGGAAAUUG------------UGACg----------UGUAGUAGUUGU- -5'
28271 3' -44.5 NC_005902.1 + 29538 0.67 0.999997
Target:  5'- aUCCUUUAACuCUuaagGCAUCAUCAAUg -3'
miRNA:   3'- -GGGAAAUUGuGAcg--UGUAGUAGUUGu -5'
28271 3' -44.5 NC_005902.1 + 31346 0.7 0.999863
Target:  5'- gCCUUUAACuccaaACAUCAUCAAUAa -3'
miRNA:   3'- gGGAAAUUGugacgUGUAGUAGUUGU- -5'
28271 3' -44.5 NC_005902.1 + 32282 0.68 0.999987
Target:  5'- aCCCUUUAACcCUuuaaacccuccaUAUAUCAUCAACAa -3'
miRNA:   3'- -GGGAAAUUGuGAc-----------GUGUAGUAGUUGU- -5'
28271 3' -44.5 NC_005902.1 + 34906 0.66 0.999999
Target:  5'- aUCUUUUAACuccauAUUGUcaauagacuuuACAUCAUCAACAa -3'
miRNA:   3'- -GGGAAAUUG-----UGACG-----------UGUAGUAGUUGU- -5'
28271 3' -44.5 NC_005902.1 + 36096 0.76 0.977212
Target:  5'- aCCCUUUAACACcuaaggUGUgguugaugacauaaaGCAUCAUUAACAa -3'
miRNA:   3'- -GGGAAAUUGUG------ACG---------------UGUAGUAGUUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.