miRNA display CGI


Results 1 - 20 of 100 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28271 3' -44.5 NC_005902.1 + 10982 1.14 0.025029
Target:  5'- aCCCUUUAACACUGCACAUCAUCAACAa -3'
miRNA:   3'- -GGGAAAUUGUGACGUGUAGUAGUUGU- -5'
28271 3' -44.5 NC_005902.1 + 10060 0.87 0.578261
Target:  5'- aCCCUUUAACuCUGCGCuGUUAUCAACAc -3'
miRNA:   3'- -GGGAAAUUGuGACGUG-UAGUAGUUGU- -5'
28271 3' -44.5 NC_005902.1 + 84065 0.84 0.741276
Target:  5'- aUCCUUUAACuCUGCACuAUCAUCAAUg -3'
miRNA:   3'- -GGGAAAUUGuGACGUG-UAGUAGUUGu -5'
28271 3' -44.5 NC_005902.1 + 94951 0.79 0.920594
Target:  5'- aCCCUUUAACuccaCACAUCAUCAAUAa -3'
miRNA:   3'- -GGGAAAUUGugacGUGUAGUAGUUGU- -5'
28271 3' -44.5 NC_005902.1 + 162651 0.79 0.92647
Target:  5'- aCCCUUUAACAUUGaaCACAUCAUaauGACAc -3'
miRNA:   3'- -GGGAAAUUGUGAC--GUGUAGUAg--UUGU- -5'
28271 3' -44.5 NC_005902.1 + 137493 0.78 0.95173
Target:  5'- aCUCUUUAACuCUaUACAUCAUCAACAa -3'
miRNA:   3'- -GGGAAAUUGuGAcGUGUAGUAGUUGU- -5'
28271 3' -44.5 NC_005902.1 + 88893 0.78 0.955972
Target:  5'- aUCCUUUAACua--CACAUCAUCGACAa -3'
miRNA:   3'- -GGGAAAUUGugacGUGUAGUAGUUGU- -5'
28271 3' -44.5 NC_005902.1 + 170070 0.77 0.970391
Target:  5'- aUCCUUUAACuc--CACAUCAUCAACGa -3'
miRNA:   3'- -GGGAAAUUGugacGUGUAGUAGUUGU- -5'
28271 3' -44.5 NC_005902.1 + 167375 0.76 0.975897
Target:  5'- aCCCUUUAacucuACACUGUugccagugacguaGCAUCAUUGGCAc -3'
miRNA:   3'- -GGGAAAU-----UGUGACG-------------UGUAGUAGUUGU- -5'
28271 3' -44.5 NC_005902.1 + 36096 0.76 0.977212
Target:  5'- aCCCUUUAACACcuaaggUGUgguugaugacauaaaGCAUCAUUAACAa -3'
miRNA:   3'- -GGGAAAUUGUG------ACG---------------UGUAGUAGUUGU- -5'
28271 3' -44.5 NC_005902.1 + 20183 0.75 0.986952
Target:  5'- aCCCUUUA--ACUGCACAUUguuAUCAAUg -3'
miRNA:   3'- -GGGAAAUugUGACGUGUAG---UAGUUGu -5'
28271 3' -44.5 NC_005902.1 + 61523 0.75 0.988562
Target:  5'- aCCCUUUAAUACUuaaGCuauauaugaGCAUCGUUGACAa -3'
miRNA:   3'- -GGGAAAUUGUGA---CG---------UGUAGUAGUUGU- -5'
28271 3' -44.5 NC_005902.1 + 81927 0.75 0.990013
Target:  5'- aCCCUUUAACuCcGCaACAUCAUUAAUAc -3'
miRNA:   3'- -GGGAAAUUGuGaCG-UGUAGUAGUUGU- -5'
28271 3' -44.5 NC_005902.1 + 175021 0.75 0.991316
Target:  5'- aCCCUUUAACucaUGCA--UCAUCAAUAa -3'
miRNA:   3'- -GGGAAAUUGug-ACGUguAGUAGUUGU- -5'
28271 3' -44.5 NC_005902.1 + 58601 0.74 0.992481
Target:  5'- aCCCUUUAACuCUaCGCAUCAUUGAUg -3'
miRNA:   3'- -GGGAAAUUGuGAcGUGUAGUAGUUGu -5'
28271 3' -44.5 NC_005902.1 + 81354 0.74 0.992481
Target:  5'- aCCCUUUAACuCUaCAcCAUUAUCAACAc -3'
miRNA:   3'- -GGGAAAUUGuGAcGU-GUAGUAGUUGU- -5'
28271 3' -44.5 NC_005902.1 + 127845 0.74 0.992481
Target:  5'- aCCCUUUAACuCUaCGCAUCAUUGAUg -3'
miRNA:   3'- -GGGAAAUUGuGAcGUGUAGUAGUUGu -5'
28271 3' -44.5 NC_005902.1 + 78151 0.74 0.9939
Target:  5'- aUCCUUUAacuuuACACUGUcaucaacaacgcuuaGCAUCAUCAAUg -3'
miRNA:   3'- -GGGAAAU-----UGUGACG---------------UGUAGUAGUUGu -5'
28271 3' -44.5 NC_005902.1 + 48319 0.74 0.994775
Target:  5'- aCCCUUUAAUuccuuuaUGCaucaaugaugcuaauGCAUCAUCAGCAa -3'
miRNA:   3'- -GGGAAAUUGug-----ACG---------------UGUAGUAGUUGU- -5'
28271 3' -44.5 NC_005902.1 + 68237 0.74 0.995249
Target:  5'- aCCCUUUAACuCUGCA--UCAUUAAUg -3'
miRNA:   3'- -GGGAAAUUGuGACGUguAGUAGUUGu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.