miRNA display CGI


Results 21 - 40 of 100 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28271 3' -44.5 NC_005902.1 + 154779 0.74 0.995545
Target:  5'- aCCUUUUAACAUcacauUGUcauugauuaugcaaaGCAUCAUCGACAa -3'
miRNA:   3'- -GGGAAAUUGUG-----ACG---------------UGUAGUAGUUGU- -5'
28271 3' -44.5 NC_005902.1 + 1555 0.73 0.995961
Target:  5'- aCCCUUUAACuu--CACAUCAUCAuCAa -3'
miRNA:   3'- -GGGAAAUUGugacGUGUAGUAGUuGU- -5'
28271 3' -44.5 NC_005902.1 + 63167 0.73 0.995961
Target:  5'- aCCCUUUAAUucCUaagGCAUCAUCAACAa -3'
miRNA:   3'- -GGGAAAUUGu-GAcg-UGUAGUAGUUGU- -5'
28271 3' -44.5 NC_005902.1 + 120438 0.73 0.995961
Target:  5'- aCCCUUUAACuuUaCACAUUAUUAACAc -3'
miRNA:   3'- -GGGAAAUUGugAcGUGUAGUAGUUGU- -5'
28271 3' -44.5 NC_005902.1 + 43916 0.73 0.995961
Target:  5'- aCUCUUUAACACcuaaaGCAUCAUCGAUg -3'
miRNA:   3'- -GGGAAAUUGUGacg--UGUAGUAGUUGu -5'
28271 3' -44.5 NC_005902.1 + 67063 0.73 0.996583
Target:  5'- aCCCUUUAACuc--CACAuuaUCAUCAACAa -3'
miRNA:   3'- -GGGAAAUUGugacGUGU---AGUAGUUGU- -5'
28271 3' -44.5 NC_005902.1 + 131007 0.73 0.997124
Target:  5'- aCCCUUUAAUuccaUGC-UGUCAUCAACGa -3'
miRNA:   3'- -GGGAAAUUGug--ACGuGUAGUAGUUGU- -5'
28271 3' -44.5 NC_005902.1 + 49982 0.73 0.997592
Target:  5'- aCCCUUUAACucCUaagGCAUCAUCAAUAa -3'
miRNA:   3'- -GGGAAAUUGu-GAcg-UGUAGUAGUUGU- -5'
28271 3' -44.5 NC_005902.1 + 160950 0.73 0.997995
Target:  5'- aCCCUUUAACucuaUGU--AUCGUCAACAa -3'
miRNA:   3'- -GGGAAAUUGug--ACGugUAGUAGUUGU- -5'
28271 3' -44.5 NC_005902.1 + 75833 0.73 0.997995
Target:  5'- aCCCUUUAACucaUGCA--UCAUCAAUg -3'
miRNA:   3'- -GGGAAAUUGug-ACGUguAGUAGUUGu -5'
28271 3' -44.5 NC_005902.1 + 140992 0.72 0.998339
Target:  5'- aCCCUUUAACuccaCACAUUAUCAAUg -3'
miRNA:   3'- -GGGAAAUUGugacGUGUAGUAGUUGu -5'
28271 3' -44.5 NC_005902.1 + 102205 0.72 0.998632
Target:  5'- aCCCUUUAACucCUaagAUAUCAUCAACAa -3'
miRNA:   3'- -GGGAAAUUGu-GAcg-UGUAGUAGUUGU- -5'
28271 3' -44.5 NC_005902.1 + 89961 0.72 0.998632
Target:  5'- aCCCUUUAACucCUaagGCAUUAUCAACAa -3'
miRNA:   3'- -GGGAAAUUGu-GAcg-UGUAGUAGUUGU- -5'
28271 3' -44.5 NC_005902.1 + 173197 0.72 0.998632
Target:  5'- aUCCUUUAACuc--CACAUCAUCAAUg -3'
miRNA:   3'- -GGGAAAUUGugacGUGUAGUAGUUGu -5'
28271 3' -44.5 NC_005902.1 + 127677 0.72 0.999089
Target:  5'- aCCCUUUAACuccauGCGUCAUCAAUAc -3'
miRNA:   3'- -GGGAAAUUGugacgUGUAGUAGUUGU- -5'
28271 3' -44.5 NC_005902.1 + 78757 0.72 0.999089
Target:  5'- aCgCUUUAACcCUGCAUuGUUAUCAACAa -3'
miRNA:   3'- -GgGAAAUUGuGACGUG-UAGUAGUUGU- -5'
28271 3' -44.5 NC_005902.1 + 170202 0.72 0.999089
Target:  5'- aCCCUUUAACua--CACAUUAUCAAUg -3'
miRNA:   3'- -GGGAAAUUGugacGUGUAGUAGUUGu -5'
28271 3' -44.5 NC_005902.1 + 130810 0.71 0.999263
Target:  5'- aCCCUUUAACuuCUaagGCGUCAUCGAUAa -3'
miRNA:   3'- -GGGAAAUUGu-GAcg-UGUAGUAGUUGU- -5'
28271 3' -44.5 NC_005902.1 + 113733 0.71 0.999263
Target:  5'- aCCUUUAACucCUaaaGCAgCAUCAUUAACAa -3'
miRNA:   3'- gGGAAAUUGu-GA---CGU-GUAGUAGUUGU- -5'
28271 3' -44.5 NC_005902.1 + 180325 0.71 0.999408
Target:  5'- aCCUUUUAACACUGUACuagUGUUAAUu -3'
miRNA:   3'- -GGGAAAUUGUGACGUGua-GUAGUUGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.