miRNA display CGI


Results 21 - 40 of 100 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28271 3' -44.5 NC_005902.1 + 84065 0.84 0.741276
Target:  5'- aUCCUUUAACuCUGCACuAUCAUCAAUg -3'
miRNA:   3'- -GGGAAAUUGuGACGUG-UAGUAGUUGu -5'
28271 3' -44.5 NC_005902.1 + 85402 0.69 0.999921
Target:  5'- aCCCUUUAACuaauuuaUGU-CAUCAUUGACAa -3'
miRNA:   3'- -GGGAAAUUGug-----ACGuGUAGUAGUUGU- -5'
28271 3' -44.5 NC_005902.1 + 169442 0.69 0.999921
Target:  5'- aCCCUUUAACacuuaaGCUGUAUAUUuguuugCGACAc -3'
miRNA:   3'- -GGGAAAUUG------UGACGUGUAGua----GUUGU- -5'
28271 3' -44.5 NC_005902.1 + 67424 0.71 0.999626
Target:  5'- aUCCUUUAACuCUaUACuGUCAUCAACAa -3'
miRNA:   3'- -GGGAAAUUGuGAcGUG-UAGUAGUUGU- -5'
28271 3' -44.5 NC_005902.1 + 68237 0.74 0.995249
Target:  5'- aCCCUUUAACuCUGCA--UCAUUAAUg -3'
miRNA:   3'- -GGGAAAUUGuGACGUguAGUAGUUGu -5'
28271 3' -44.5 NC_005902.1 + 37318 0.68 0.999988
Target:  5'- aCCCUUUAACuccaUGU-UGUCAUCAAUAa -3'
miRNA:   3'- -GGGAAAUUGug--ACGuGUAGUAGUUGU- -5'
28271 3' -44.5 NC_005902.1 + 180957 0.69 0.999967
Target:  5'- aCCCUUUAACccaUGC-UGUUGUCAACGa -3'
miRNA:   3'- -GGGAAAUUGug-ACGuGUAGUAGUUGU- -5'
28271 3' -44.5 NC_005902.1 + 58601 0.74 0.992481
Target:  5'- aCCCUUUAACuCUaCGCAUCAUUGAUg -3'
miRNA:   3'- -GGGAAAUUGuGAcGUGUAGUAGUUGu -5'
28271 3' -44.5 NC_005902.1 + 63108 0.7 0.99977
Target:  5'- aCCCUUUAACuuuuaagGCAuCAUCAUUGAUAu -3'
miRNA:   3'- -GGGAAAUUGuga----CGU-GUAGUAGUUGU- -5'
28271 3' -44.5 NC_005902.1 + 158020 0.71 0.999626
Target:  5'- -aCUUUAACACUGUgcuauuguuaauACuuuguGUCAUCAACAa -3'
miRNA:   3'- ggGAAAUUGUGACG------------UG-----UAGUAGUUGU- -5'
28271 3' -44.5 NC_005902.1 + 81927 0.75 0.990013
Target:  5'- aCCCUUUAACuCcGCaACAUCAUUAAUAc -3'
miRNA:   3'- -GGGAAAUUGuGaCG-UGUAGUAGUUGU- -5'
28271 3' -44.5 NC_005902.1 + 61523 0.75 0.988562
Target:  5'- aCCCUUUAAUACUuaaGCuauauaugaGCAUCGUUGACAa -3'
miRNA:   3'- -GGGAAAUUGUGA---CG---------UGUAGUAGUUGU- -5'
28271 3' -44.5 NC_005902.1 + 8351 0.67 0.999996
Target:  5'- cUCCUaaAACAUUGUcgaugacauaaaACAUCAUUAACAa -3'
miRNA:   3'- -GGGAaaUUGUGACG------------UGUAGUAGUUGU- -5'
28271 3' -44.5 NC_005902.1 + 106073 0.68 0.999988
Target:  5'- aUCCUUUAACuucaCACuGUCAUCAACGa -3'
miRNA:   3'- -GGGAAAUUGugacGUG-UAGUAGUUGU- -5'
28271 3' -44.5 NC_005902.1 + 11127 0.69 0.999914
Target:  5'- aCCCUuuaaauccauguugUUGAUGCUuuGCAUCAUCAAUg -3'
miRNA:   3'- -GGGA--------------AAUUGUGAcgUGUAGUAGUUGu -5'
28271 3' -44.5 NC_005902.1 + 49982 0.73 0.997592
Target:  5'- aCCCUUUAACucCUaagGCAUCAUCAAUAa -3'
miRNA:   3'- -GGGAAAUUGu-GAcg-UGUAGUAGUUGU- -5'
28271 3' -44.5 NC_005902.1 + 154779 0.74 0.995545
Target:  5'- aCCUUUUAACAUcacauUGUcauugauuaugcaaaGCAUCAUCGACAa -3'
miRNA:   3'- -GGGAAAUUGUG-----ACG---------------UGUAGUAGUUGU- -5'
28271 3' -44.5 NC_005902.1 + 20183 0.75 0.986952
Target:  5'- aCCCUUUA--ACUGCACAUUguuAUCAAUg -3'
miRNA:   3'- -GGGAAAUugUGACGUGUAG---UAGUUGu -5'
28271 3' -44.5 NC_005902.1 + 154655 0.71 0.999626
Target:  5'- aCCCUUUAACuuuuaagGCAUUAUCAACAa -3'
miRNA:   3'- -GGGAAAUUGugacg--UGUAGUAGUUGU- -5'
28271 3' -44.5 NC_005902.1 + 67779 0.7 0.99977
Target:  5'- aUCCUUUAACuCUaCACuGUCAUCAAUAa -3'
miRNA:   3'- -GGGAAAUUGuGAcGUG-UAGUAGUUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.