miRNA display CGI


Results 21 - 40 of 100 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28271 3' -44.5 NC_005902.1 + 158020 0.71 0.999626
Target:  5'- -aCUUUAACACUGUgcuauuguuaauACuuuguGUCAUCAACAa -3'
miRNA:   3'- ggGAAAUUGUGACG------------UG-----UAGUAGUUGU- -5'
28271 3' -44.5 NC_005902.1 + 90489 0.71 0.999528
Target:  5'- aCCCUUUAACuCUuaagGCAUCAUCGAUg -3'
miRNA:   3'- -GGGAAAUUGuGAcg--UGUAGUAGUUGu -5'
28271 3' -44.5 NC_005902.1 + 78151 0.74 0.9939
Target:  5'- aUCCUUUAacuuuACACUGUcaucaacaacgcuuaGCAUCAUCAAUg -3'
miRNA:   3'- -GGGAAAU-----UGUGACG---------------UGUAGUAGUUGu -5'
28271 3' -44.5 NC_005902.1 + 167375 0.76 0.975897
Target:  5'- aCCCUUUAacucuACACUGUugccagugacguaGCAUCAUUGGCAc -3'
miRNA:   3'- -GGGAAAU-----UGUGACG-------------UGUAGUAGUUGU- -5'
28271 3' -44.5 NC_005902.1 + 134326 0.68 0.999983
Target:  5'- aCCCUUUAACAUUuaaGCAUAUacaaAUgAGCAc -3'
miRNA:   3'- -GGGAAAUUGUGA---CGUGUAg---UAgUUGU- -5'
28271 3' -44.5 NC_005902.1 + 120962 0.7 0.999895
Target:  5'- uUCCUUUGGCAgaagGUACaAUCGUUAACAu -3'
miRNA:   3'- -GGGAAAUUGUga--CGUG-UAGUAGUUGU- -5'
28271 3' -44.5 NC_005902.1 + 113733 0.71 0.999263
Target:  5'- aCCUUUAACucCUaaaGCAgCAUCAUUAACAa -3'
miRNA:   3'- gGGAAAUUGu-GA---CGU-GUAGUAGUUGU- -5'
28271 3' -44.5 NC_005902.1 + 88893 0.78 0.955972
Target:  5'- aUCCUUUAACua--CACAUCAUCGACAa -3'
miRNA:   3'- -GGGAAAUUGugacGUGUAGUAGUUGU- -5'
28271 3' -44.5 NC_005902.1 + 23357 0.7 0.999792
Target:  5'- aCCCUUUAAUucuauguuguuaaUGCAgUGUCAUCAACAa -3'
miRNA:   3'- -GGGAAAUUGug-----------ACGU-GUAGUAGUUGU- -5'
28271 3' -44.5 NC_005902.1 + 162651 0.79 0.92647
Target:  5'- aCCCUUUAACAUUGaaCACAUCAUaauGACAc -3'
miRNA:   3'- -GGGAAAUUGUGAC--GUGUAGUAg--UUGU- -5'
28271 3' -44.5 NC_005902.1 + 130810 0.71 0.999263
Target:  5'- aCCCUUUAACuuCUaagGCGUCAUCGAUAa -3'
miRNA:   3'- -GGGAAAUUGu-GAcg-UGUAGUAGUUGU- -5'
28271 3' -44.5 NC_005902.1 + 36310 0.7 0.99977
Target:  5'- aCCCUUUAACACa-UACAUCAUUuAUAa -3'
miRNA:   3'- -GGGAAAUUGUGacGUGUAGUAGuUGU- -5'
28271 3' -44.5 NC_005902.1 + 67063 0.73 0.996583
Target:  5'- aCCCUUUAACuc--CACAuuaUCAUCAACAa -3'
miRNA:   3'- -GGGAAAUUGugacGUGU---AGUAGUUGU- -5'
28271 3' -44.5 NC_005902.1 + 48319 0.74 0.994775
Target:  5'- aCCCUUUAAUuccuuuaUGCaucaaugaugcuaauGCAUCAUCAGCAa -3'
miRNA:   3'- -GGGAAAUUGug-----ACG---------------UGUAGUAGUUGU- -5'
28271 3' -44.5 NC_005902.1 + 175021 0.75 0.991316
Target:  5'- aCCCUUUAACucaUGCA--UCAUCAAUAa -3'
miRNA:   3'- -GGGAAAUUGug-ACGUguAGUAGUUGU- -5'
28271 3' -44.5 NC_005902.1 + 20183 0.75 0.986952
Target:  5'- aCCCUUUA--ACUGCACAUUguuAUCAAUg -3'
miRNA:   3'- -GGGAAAUugUGACGUGUAG---UAGUUGu -5'
28271 3' -44.5 NC_005902.1 + 104234 0.68 0.999994
Target:  5'- aUCCUUUAAUucuaUGUA-AUCAUCAACAa -3'
miRNA:   3'- -GGGAAAUUGug--ACGUgUAGUAGUUGU- -5'
28271 3' -44.5 NC_005902.1 + 175938 0.68 0.999988
Target:  5'- aCCCUUUAACucCUaaggUAUCAUCAACAa -3'
miRNA:   3'- -GGGAAAUUGu-GAcgu-GUAGUAGUUGU- -5'
28271 3' -44.5 NC_005902.1 + 26455 0.69 0.999956
Target:  5'- ----aUGACACUuuGCAUCAUUAACAa -3'
miRNA:   3'- gggaaAUUGUGAcgUGUAGUAGUUGU- -5'
28271 3' -44.5 NC_005902.1 + 11127 0.69 0.999914
Target:  5'- aCCCUuuaaauccauguugUUGAUGCUuuGCAUCAUCAAUg -3'
miRNA:   3'- -GGGA--------------AAUUGUGAcgUGUAGUAGUUGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.