miRNA display CGI


Results 1 - 20 of 100 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28271 3' -44.5 NC_005902.1 + 84065 0.84 0.741276
Target:  5'- aUCCUUUAACuCUGCACuAUCAUCAAUg -3'
miRNA:   3'- -GGGAAAUUGuGACGUG-UAGUAGUUGu -5'
28271 3' -44.5 NC_005902.1 + 113733 0.71 0.999263
Target:  5'- aCCUUUAACucCUaaaGCAgCAUCAUUAACAa -3'
miRNA:   3'- gGGAAAUUGu-GA---CGU-GUAGUAGUUGU- -5'
28271 3' -44.5 NC_005902.1 + 90489 0.71 0.999528
Target:  5'- aCCCUUUAACuCUuaagGCAUCAUCGAUg -3'
miRNA:   3'- -GGGAAAUUGuGAcg--UGUAGUAGUUGu -5'
28271 3' -44.5 NC_005902.1 + 91308 0.66 1
Target:  5'- aCCUUUUAACACUuaaacuauauacGCAC-UCAUUuguACAu -3'
miRNA:   3'- -GGGAAAUUGUGA------------CGUGuAGUAGu--UGU- -5'
28271 3' -44.5 NC_005902.1 + 20183 0.75 0.986952
Target:  5'- aCCCUUUA--ACUGCACAUUguuAUCAAUg -3'
miRNA:   3'- -GGGAAAUugUGACGUGUAG---UAGUUGu -5'
28271 3' -44.5 NC_005902.1 + 61523 0.75 0.988562
Target:  5'- aCCCUUUAAUACUuaaGCuauauaugaGCAUCGUUGACAa -3'
miRNA:   3'- -GGGAAAUUGUGA---CG---------UGUAGUAGUUGU- -5'
28271 3' -44.5 NC_005902.1 + 175021 0.75 0.991316
Target:  5'- aCCCUUUAACucaUGCA--UCAUCAAUAa -3'
miRNA:   3'- -GGGAAAUUGug-ACGUguAGUAGUUGU- -5'
28271 3' -44.5 NC_005902.1 + 58601 0.74 0.992481
Target:  5'- aCCCUUUAACuCUaCGCAUCAUUGAUg -3'
miRNA:   3'- -GGGAAAUUGuGAcGUGUAGUAGUUGu -5'
28271 3' -44.5 NC_005902.1 + 48319 0.74 0.994775
Target:  5'- aCCCUUUAAUuccuuuaUGCaucaaugaugcuaauGCAUCAUCAGCAa -3'
miRNA:   3'- -GGGAAAUUGug-----ACG---------------UGUAGUAGUUGU- -5'
28271 3' -44.5 NC_005902.1 + 78757 0.72 0.999089
Target:  5'- aCgCUUUAACcCUGCAUuGUUAUCAACAa -3'
miRNA:   3'- -GgGAAAUUGuGACGUG-UAGUAGUUGU- -5'
28271 3' -44.5 NC_005902.1 + 154779 0.74 0.995545
Target:  5'- aCCUUUUAACAUcacauUGUcauugauuaugcaaaGCAUCAUCGACAa -3'
miRNA:   3'- -GGGAAAUUGUG-----ACG---------------UGUAGUAGUUGU- -5'
28271 3' -44.5 NC_005902.1 + 78151 0.74 0.9939
Target:  5'- aUCCUUUAacuuuACACUGUcaucaacaacgcuuaGCAUCAUCAAUg -3'
miRNA:   3'- -GGGAAAU-----UGUGACG---------------UGUAGUAGUUGu -5'
28271 3' -44.5 NC_005902.1 + 162651 0.79 0.92647
Target:  5'- aCCCUUUAACAUUGaaCACAUCAUaauGACAc -3'
miRNA:   3'- -GGGAAAUUGUGAC--GUGUAGUAg--UUGU- -5'
28271 3' -44.5 NC_005902.1 + 67063 0.73 0.996583
Target:  5'- aCCCUUUAACuc--CACAuuaUCAUCAACAa -3'
miRNA:   3'- -GGGAAAUUGugacGUGU---AGUAGUUGU- -5'
28271 3' -44.5 NC_005902.1 + 88893 0.78 0.955972
Target:  5'- aUCCUUUAACua--CACAUCAUCGACAa -3'
miRNA:   3'- -GGGAAAUUGugacGUGUAGUAGUUGU- -5'
28271 3' -44.5 NC_005902.1 + 81354 0.74 0.992481
Target:  5'- aCCCUUUAACuCUaCAcCAUUAUCAACAc -3'
miRNA:   3'- -GGGAAAUUGuGAcGU-GUAGUAGUUGU- -5'
28271 3' -44.5 NC_005902.1 + 49982 0.73 0.997592
Target:  5'- aCCCUUUAACucCUaagGCAUCAUCAAUAa -3'
miRNA:   3'- -GGGAAAUUGu-GAcg-UGUAGUAGUUGU- -5'
28271 3' -44.5 NC_005902.1 + 130810 0.71 0.999263
Target:  5'- aCCCUUUAACuuCUaagGCGUCAUCGAUAa -3'
miRNA:   3'- -GGGAAAUUGu-GAcg-UGUAGUAGUUGU- -5'
28271 3' -44.5 NC_005902.1 + 167375 0.76 0.975897
Target:  5'- aCCCUUUAacucuACACUGUugccagugacguaGCAUCAUUGGCAc -3'
miRNA:   3'- -GGGAAAU-----UGUGACG-------------UGUAGUAGUUGU- -5'
28271 3' -44.5 NC_005902.1 + 81927 0.75 0.990013
Target:  5'- aCCCUUUAACuCcGCaACAUCAUUAAUAc -3'
miRNA:   3'- -GGGAAAUUGuGaCG-UGUAGUAGUUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.