miRNA display CGI


Results 1 - 20 of 100 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28271 3' -44.5 NC_005902.1 + 20125 0.7 0.999895
Target:  5'- aCCCUUUAACuu--CACAUCAUUGAUg -3'
miRNA:   3'- -GGGAAAUUGugacGUGUAGUAGUUGu -5'
28271 3' -44.5 NC_005902.1 + 86340 0.68 0.999988
Target:  5'- aUCCUUUAAUucCUaagGCGUCAUCAACAa -3'
miRNA:   3'- -GGGAAAUUGu-GAcg-UGUAGUAGUUGU- -5'
28271 3' -44.5 NC_005902.1 + 71259 0.68 0.999988
Target:  5'- aCCCUUUAACuCU--ACAUCGUCAcCGa -3'
miRNA:   3'- -GGGAAAUUGuGAcgUGUAGUAGUuGU- -5'
28271 3' -44.5 NC_005902.1 + 85553 0.68 0.999988
Target:  5'- aCCCUUUAAUuccaaaCACAUCAcCAACAa -3'
miRNA:   3'- -GGGAAAUUGugac--GUGUAGUaGUUGU- -5'
28271 3' -44.5 NC_005902.1 + 32282 0.68 0.999987
Target:  5'- aCCCUUUAACcCUuuaaacccuccaUAUAUCAUCAACAa -3'
miRNA:   3'- -GGGAAAUUGuGAc-----------GUGUAGUAGUUGU- -5'
28271 3' -44.5 NC_005902.1 + 4898 0.68 0.999974
Target:  5'- aCCCUUUAacucucaaagcauuACAgUGauauaaaGCGUCAUCAAUAa -3'
miRNA:   3'- -GGGAAAU--------------UGUgACg------UGUAGUAGUUGU- -5'
28271 3' -44.5 NC_005902.1 + 110249 0.69 0.999967
Target:  5'- aCCCUUUAAUuccaCAUGUCAUUAACAa -3'
miRNA:   3'- -GGGAAAUUGugacGUGUAGUAGUUGU- -5'
28271 3' -44.5 NC_005902.1 + 139993 0.69 0.999961
Target:  5'- aUCCUUUAACucaaaUGCauugaugauguauuaGCAUUAUCAGCAc -3'
miRNA:   3'- -GGGAAAUUGug---ACG---------------UGUAGUAGUUGU- -5'
28271 3' -44.5 NC_005902.1 + 94764 0.69 0.999961
Target:  5'- cCCCUUUAcuucACAUUGUuauugaugauacaaaGCAUCAUUAAUg -3'
miRNA:   3'- -GGGAAAU----UGUGACG---------------UGUAGUAGUUGu -5'
28271 3' -44.5 NC_005902.1 + 114320 0.68 0.999993
Target:  5'- aCCCUUUAAuucCACaucgucauugaugaUGCaacGCAUCAUCAAUg -3'
miRNA:   3'- -GGGAAAUU---GUG--------------ACG---UGUAGUAGUUGu -5'
28271 3' -44.5 NC_005902.1 + 4542 0.68 0.999994
Target:  5'- aCCCUUUAACuuCUaaaGCAUUGUCGAUAa -3'
miRNA:   3'- -GGGAAAUUGu-GAcg-UGUAGUAGUUGU- -5'
28271 3' -44.5 NC_005902.1 + 116844 0.67 0.999996
Target:  5'- aCCCUUUAACuu--CAUAUCAUUAAUg -3'
miRNA:   3'- -GGGAAAUUGugacGUGUAGUAGUUGu -5'
28271 3' -44.5 NC_005902.1 + 97112 0.66 1
Target:  5'- aCUUUUUAACua--CACAUCAUCGAUAa -3'
miRNA:   3'- -GGGAAAUUGugacGUGUAGUAGUUGU- -5'
28271 3' -44.5 NC_005902.1 + 37871 0.66 1
Target:  5'- aCCCUUUAAauccuagcauuCGCUGCAC-UUA-CAGCu -3'
miRNA:   3'- -GGGAAAUU-----------GUGACGUGuAGUaGUUGu -5'
28271 3' -44.5 NC_005902.1 + 1580 0.66 1
Target:  5'- ----aUGAUGCUuCACAUCAUUAACAa -3'
miRNA:   3'- gggaaAUUGUGAcGUGUAGUAGUUGU- -5'
28271 3' -44.5 NC_005902.1 + 107242 0.66 1
Target:  5'- aCCCUUUAACuCUuaAggUGUUAUCAACAa -3'
miRNA:   3'- -GGGAAAUUGuGAcgU--GUAGUAGUUGU- -5'
28271 3' -44.5 NC_005902.1 + 87062 0.66 0.999999
Target:  5'- cCCCUUaacuucuaaGGCAUUGUuaaugauacuuuGCAUCAUUAACAa -3'
miRNA:   3'- -GGGAAa--------UUGUGACG------------UGUAGUAGUUGU- -5'
28271 3' -44.5 NC_005902.1 + 16113 0.67 0.999998
Target:  5'- aCCCUUUAACcCcaaaCACGUCGUCggUg -3'
miRNA:   3'- -GGGAAAUUGuGac--GUGUAGUAGuuGu -5'
28271 3' -44.5 NC_005902.1 + 39348 0.67 0.999997
Target:  5'- aCCCUUUAACuCUaCAuUGUCAUCAAUg -3'
miRNA:   3'- -GGGAAAUUGuGAcGU-GUAGUAGUUGu -5'
28271 3' -44.5 NC_005902.1 + 29538 0.67 0.999997
Target:  5'- aUCCUUUAACuCUuaagGCAUCAUCAAUg -3'
miRNA:   3'- -GGGAAAUUGuGAcg--UGUAGUAGUUGu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.