miRNA display CGI


Results 21 - 40 of 100 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28271 3' -44.5 NC_005902.1 + 29538 0.67 0.999997
Target:  5'- aUCCUUUAACuCUuaagGCAUCAUCAAUg -3'
miRNA:   3'- -GGGAAAUUGuGAcg--UGUAGUAGUUGu -5'
28271 3' -44.5 NC_005902.1 + 39348 0.67 0.999997
Target:  5'- aCCCUUUAACuCUaCAuUGUCAUCAAUg -3'
miRNA:   3'- -GGGAAAUUGuGAcGU-GUAGUAGUUGu -5'
28271 3' -44.5 NC_005902.1 + 8351 0.67 0.999996
Target:  5'- cUCCUaaAACAUUGUcgaugacauaaaACAUCAUUAACAa -3'
miRNA:   3'- -GGGAaaUUGUGACG------------UGUAGUAGUUGU- -5'
28271 3' -44.5 NC_005902.1 + 116844 0.67 0.999996
Target:  5'- aCCCUUUAACuu--CAUAUCAUUAAUg -3'
miRNA:   3'- -GGGAAAUUGugacGUGUAGUAGUUGu -5'
28271 3' -44.5 NC_005902.1 + 104234 0.68 0.999994
Target:  5'- aUCCUUUAAUucuaUGUA-AUCAUCAACAa -3'
miRNA:   3'- -GGGAAAUUGug--ACGUgUAGUAGUUGU- -5'
28271 3' -44.5 NC_005902.1 + 4542 0.68 0.999994
Target:  5'- aCCCUUUAACuuCUaaaGCAUUGUCGAUAa -3'
miRNA:   3'- -GGGAAAUUGu-GAcg-UGUAGUAGUUGU- -5'
28271 3' -44.5 NC_005902.1 + 114320 0.68 0.999993
Target:  5'- aCCCUUUAAuucCACaucgucauugaugaUGCaacGCAUCAUCAAUg -3'
miRNA:   3'- -GGGAAAUU---GUG--------------ACG---UGUAGUAGUUGu -5'
28271 3' -44.5 NC_005902.1 + 106073 0.68 0.999988
Target:  5'- aUCCUUUAACuucaCACuGUCAUCAACGa -3'
miRNA:   3'- -GGGAAAUUGugacGUG-UAGUAGUUGU- -5'
28271 3' -44.5 NC_005902.1 + 37318 0.68 0.999988
Target:  5'- aCCCUUUAACuccaUGU-UGUCAUCAAUAa -3'
miRNA:   3'- -GGGAAAUUGug--ACGuGUAGUAGUUGU- -5'
28271 3' -44.5 NC_005902.1 + 175938 0.68 0.999988
Target:  5'- aCCCUUUAACucCUaaggUAUCAUCAACAa -3'
miRNA:   3'- -GGGAAAUUGu-GAcgu-GUAGUAGUUGU- -5'
28271 3' -44.5 NC_005902.1 + 86340 0.68 0.999988
Target:  5'- aUCCUUUAAUucCUaagGCGUCAUCAACAa -3'
miRNA:   3'- -GGGAAAUUGu-GAcg-UGUAGUAGUUGU- -5'
28271 3' -44.5 NC_005902.1 + 71259 0.68 0.999988
Target:  5'- aCCCUUUAACuCU--ACAUCGUCAcCGa -3'
miRNA:   3'- -GGGAAAUUGuGAcgUGUAGUAGUuGU- -5'
28271 3' -44.5 NC_005902.1 + 85553 0.68 0.999988
Target:  5'- aCCCUUUAAUuccaaaCACAUCAcCAACAa -3'
miRNA:   3'- -GGGAAAUUGugac--GUGUAGUaGUUGU- -5'
28271 3' -44.5 NC_005902.1 + 32282 0.68 0.999987
Target:  5'- aCCCUUUAACcCUuuaaacccuccaUAUAUCAUCAACAa -3'
miRNA:   3'- -GGGAAAUUGuGAc-----------GUGUAGUAGUUGU- -5'
28271 3' -44.5 NC_005902.1 + 54870 0.68 0.999983
Target:  5'- aCCCUUUAACACcuaaGC-UAUUAcUCAACAc -3'
miRNA:   3'- -GGGAAAUUGUGa---CGuGUAGU-AGUUGU- -5'
28271 3' -44.5 NC_005902.1 + 134326 0.68 0.999983
Target:  5'- aCCCUUUAACAUUuaaGCAUAUacaaAUgAGCAc -3'
miRNA:   3'- -GGGAAAUUGUGA---CGUGUAg---UAgUUGU- -5'
28271 3' -44.5 NC_005902.1 + 4898 0.68 0.999974
Target:  5'- aCCCUUUAacucucaaagcauuACAgUGauauaaaGCGUCAUCAAUAa -3'
miRNA:   3'- -GGGAAAU--------------UGUgACg------UGUAGUAGUUGU- -5'
28271 3' -44.5 NC_005902.1 + 110249 0.69 0.999967
Target:  5'- aCCCUUUAAUuccaCAUGUCAUUAACAa -3'
miRNA:   3'- -GGGAAAUUGugacGUGUAGUAGUUGU- -5'
28271 3' -44.5 NC_005902.1 + 180957 0.69 0.999967
Target:  5'- aCCCUUUAACccaUGC-UGUUGUCAACGa -3'
miRNA:   3'- -GGGAAAUUGug-ACGuGUAGUAGUUGU- -5'
28271 3' -44.5 NC_005902.1 + 139993 0.69 0.999961
Target:  5'- aUCCUUUAACucaaaUGCauugaugauguauuaGCAUUAUCAGCAc -3'
miRNA:   3'- -GGGAAAUUGug---ACG---------------UGUAGUAGUUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.