miRNA display CGI


Results 41 - 60 of 100 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28271 3' -44.5 NC_005902.1 + 139993 0.69 0.999961
Target:  5'- aUCCUUUAACucaaaUGCauugaugauguauuaGCAUUAUCAGCAc -3'
miRNA:   3'- -GGGAAAUUGug---ACG---------------UGUAGUAGUUGU- -5'
28271 3' -44.5 NC_005902.1 + 26455 0.69 0.999956
Target:  5'- ----aUGACACUuuGCAUCAUUAACAa -3'
miRNA:   3'- gggaaAUUGUGAcgUGUAGUAGUUGU- -5'
28271 3' -44.5 NC_005902.1 + 169442 0.69 0.999921
Target:  5'- aCCCUUUAACacuuaaGCUGUAUAUUuguuugCGACAc -3'
miRNA:   3'- -GGGAAAUUG------UGACGUGUAGua----GUUGU- -5'
28271 3' -44.5 NC_005902.1 + 85402 0.69 0.999921
Target:  5'- aCCCUUUAACuaauuuaUGU-CAUCAUUGACAa -3'
miRNA:   3'- -GGGAAAUUGug-----ACGuGUAGUAGUUGU- -5'
28271 3' -44.5 NC_005902.1 + 11127 0.69 0.999914
Target:  5'- aCCCUuuaaauccauguugUUGAUGCUuuGCAUCAUCAAUg -3'
miRNA:   3'- -GGGA--------------AAUUGUGAcgUGUAGUAGUUGu -5'
28271 3' -44.5 NC_005902.1 + 120962 0.7 0.999895
Target:  5'- uUCCUUUGGCAgaagGUACaAUCGUUAACAu -3'
miRNA:   3'- -GGGAAAUUGUga--CGUG-UAGUAGUUGU- -5'
28271 3' -44.5 NC_005902.1 + 20125 0.7 0.999895
Target:  5'- aCCCUUUAACuu--CACAUCAUUGAUg -3'
miRNA:   3'- -GGGAAAUUGugacGUGUAGUAGUUGu -5'
28271 3' -44.5 NC_005902.1 + 49699 0.7 0.999892
Target:  5'- aCCUUUUAACucuaaacauGCUGUuacugauauguuaGCAUUAUCAGCAc -3'
miRNA:   3'- -GGGAAAUUG---------UGACG-------------UGUAGUAGUUGU- -5'
28271 3' -44.5 NC_005902.1 + 31346 0.7 0.999863
Target:  5'- gCCUUUAACuccaaACAUCAUCAAUAa -3'
miRNA:   3'- gGGAAAUUGugacgUGUAGUAGUUGU- -5'
28271 3' -44.5 NC_005902.1 + 23357 0.7 0.999792
Target:  5'- aCCCUUUAAUucuauguuguuaaUGCAgUGUCAUCAACAa -3'
miRNA:   3'- -GGGAAAUUGug-----------ACGU-GUAGUAGUUGU- -5'
28271 3' -44.5 NC_005902.1 + 118575 0.7 0.99977
Target:  5'- aCCCUUUAACuuCUaagGCAUCAUUGACAg -3'
miRNA:   3'- -GGGAAAUUGu-GAcg-UGUAGUAGUUGU- -5'
28271 3' -44.5 NC_005902.1 + 63108 0.7 0.99977
Target:  5'- aCCCUUUAACuuuuaagGCAuCAUCAUUGAUAu -3'
miRNA:   3'- -GGGAAAUUGuga----CGU-GUAGUAGUUGU- -5'
28271 3' -44.5 NC_005902.1 + 67779 0.7 0.99977
Target:  5'- aUCCUUUAACuCUaCACuGUCAUCAAUAa -3'
miRNA:   3'- -GGGAAAUUGuGAcGUG-UAGUAGUUGU- -5'
28271 3' -44.5 NC_005902.1 + 24051 0.7 0.99977
Target:  5'- aCCCUUUAAUuCUaCgACAUCAUCAAUg -3'
miRNA:   3'- -GGGAAAUUGuGAcG-UGUAGUAGUUGu -5'
28271 3' -44.5 NC_005902.1 + 36310 0.7 0.99977
Target:  5'- aCCCUUUAACACa-UACAUCAUUuAUAa -3'
miRNA:   3'- -GGGAAAUUGUGacGUGUAGUAGuUGU- -5'
28271 3' -44.5 NC_005902.1 + 67424 0.71 0.999626
Target:  5'- aUCCUUUAACuCUaUACuGUCAUCAACAa -3'
miRNA:   3'- -GGGAAAUUGuGAcGUG-UAGUAGUUGU- -5'
28271 3' -44.5 NC_005902.1 + 154655 0.71 0.999626
Target:  5'- aCCCUUUAACuuuuaagGCAUUAUCAACAa -3'
miRNA:   3'- -GGGAAAUUGugacg--UGUAGUAGUUGU- -5'
28271 3' -44.5 NC_005902.1 + 158020 0.71 0.999626
Target:  5'- -aCUUUAACACUGUgcuauuguuaauACuuuguGUCAUCAACAa -3'
miRNA:   3'- ggGAAAUUGUGACG------------UG-----UAGUAGUUGU- -5'
28271 3' -44.5 NC_005902.1 + 90489 0.71 0.999528
Target:  5'- aCCCUUUAACuCUuaagGCAUCAUCGAUg -3'
miRNA:   3'- -GGGAAAUUGuGAcg--UGUAGUAGUUGu -5'
28271 3' -44.5 NC_005902.1 + 95529 0.71 0.999528
Target:  5'- aCCCUUUAACuc--CACAUCGUCAuCGa -3'
miRNA:   3'- -GGGAAAUUGugacGUGUAGUAGUuGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.