miRNA display CGI


Results 1 - 20 of 100 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28271 3' -44.5 NC_005902.1 + 180957 0.69 0.999967
Target:  5'- aCCCUUUAACccaUGC-UGUUGUCAACGa -3'
miRNA:   3'- -GGGAAAUUGug-ACGuGUAGUAGUUGU- -5'
28271 3' -44.5 NC_005902.1 + 180325 0.71 0.999408
Target:  5'- aCCUUUUAACACUGUACuagUGUUAAUu -3'
miRNA:   3'- -GGGAAAUUGUGACGUGua-GUAGUUGu -5'
28271 3' -44.5 NC_005902.1 + 177271 0.66 1
Target:  5'- aCUCUcaaAGCAUUGUugAcaacUCAUCAACAg -3'
miRNA:   3'- -GGGAaa-UUGUGACGugU----AGUAGUUGU- -5'
28271 3' -44.5 NC_005902.1 + 175938 0.68 0.999988
Target:  5'- aCCCUUUAACucCUaaggUAUCAUCAACAa -3'
miRNA:   3'- -GGGAAAUUGu-GAcgu-GUAGUAGUUGU- -5'
28271 3' -44.5 NC_005902.1 + 175021 0.75 0.991316
Target:  5'- aCCCUUUAACucaUGCA--UCAUCAAUAa -3'
miRNA:   3'- -GGGAAAUUGug-ACGUguAGUAGUUGU- -5'
28271 3' -44.5 NC_005902.1 + 173729 0.66 1
Target:  5'- aCCCUUUAACuucuuuaUGCACcaauaauacuaacauGUCGUCAGu- -3'
miRNA:   3'- -GGGAAAUUGug-----ACGUG---------------UAGUAGUUgu -5'
28271 3' -44.5 NC_005902.1 + 173197 0.72 0.998632
Target:  5'- aUCCUUUAACuc--CACAUCAUCAAUg -3'
miRNA:   3'- -GGGAAAUUGugacGUGUAGUAGUUGu -5'
28271 3' -44.5 NC_005902.1 + 170202 0.72 0.999089
Target:  5'- aCCCUUUAACua--CACAUUAUCAAUg -3'
miRNA:   3'- -GGGAAAUUGugacGUGUAGUAGUUGu -5'
28271 3' -44.5 NC_005902.1 + 170070 0.77 0.970391
Target:  5'- aUCCUUUAACuc--CACAUCAUCAACGa -3'
miRNA:   3'- -GGGAAAUUGugacGUGUAGUAGUUGU- -5'
28271 3' -44.5 NC_005902.1 + 169442 0.69 0.999921
Target:  5'- aCCCUUUAACacuuaaGCUGUAUAUUuguuugCGACAc -3'
miRNA:   3'- -GGGAAAUUG------UGACGUGUAGua----GUUGU- -5'
28271 3' -44.5 NC_005902.1 + 167375 0.76 0.975897
Target:  5'- aCCCUUUAacucuACACUGUugccagugacguaGCAUCAUUGGCAc -3'
miRNA:   3'- -GGGAAAU-----UGUGACG-------------UGUAGUAGUUGU- -5'
28271 3' -44.5 NC_005902.1 + 162651 0.79 0.92647
Target:  5'- aCCCUUUAACAUUGaaCACAUCAUaauGACAc -3'
miRNA:   3'- -GGGAAAUUGUGAC--GUGUAGUAg--UUGU- -5'
28271 3' -44.5 NC_005902.1 + 162490 0.67 0.999998
Target:  5'- ----aUGGCAUUuUACAUCAUCAACAa -3'
miRNA:   3'- gggaaAUUGUGAcGUGUAGUAGUUGU- -5'
28271 3' -44.5 NC_005902.1 + 160950 0.73 0.997995
Target:  5'- aCCCUUUAACucuaUGU--AUCGUCAACAa -3'
miRNA:   3'- -GGGAAAUUGug--ACGugUAGUAGUUGU- -5'
28271 3' -44.5 NC_005902.1 + 158020 0.71 0.999626
Target:  5'- -aCUUUAACACUGUgcuauuguuaauACuuuguGUCAUCAACAa -3'
miRNA:   3'- ggGAAAUUGUGACG------------UG-----UAGUAGUUGU- -5'
28271 3' -44.5 NC_005902.1 + 157917 0.67 0.999997
Target:  5'- aCCCUUUAACuccaUGU--GUCAUCGAUg -3'
miRNA:   3'- -GGGAAAUUGug--ACGugUAGUAGUUGu -5'
28271 3' -44.5 NC_005902.1 + 154779 0.74 0.995545
Target:  5'- aCCUUUUAACAUcacauUGUcauugauuaugcaaaGCAUCAUCGACAa -3'
miRNA:   3'- -GGGAAAUUGUG-----ACG---------------UGUAGUAGUUGU- -5'
28271 3' -44.5 NC_005902.1 + 154655 0.71 0.999626
Target:  5'- aCCCUUUAACuuuuaagGCAUUAUCAACAa -3'
miRNA:   3'- -GGGAAAUUGugacg--UGUAGUAGUUGU- -5'
28271 3' -44.5 NC_005902.1 + 148303 0.67 0.999998
Target:  5'- aCCCUUUAAUuc--CACAUCuuuAUCAACAc -3'
miRNA:   3'- -GGGAAAUUGugacGUGUAG---UAGUUGU- -5'
28271 3' -44.5 NC_005902.1 + 140992 0.72 0.998339
Target:  5'- aCCCUUUAACuccaCACAUUAUCAAUg -3'
miRNA:   3'- -GGGAAAUUGugacGUGUAGUAGUUGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.