miRNA display CGI


Results 41 - 60 of 100 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28271 3' -44.5 NC_005902.1 + 78757 0.72 0.999089
Target:  5'- aCgCUUUAACcCUGCAUuGUUAUCAACAa -3'
miRNA:   3'- -GgGAAAUUGuGACGUG-UAGUAGUUGU- -5'
28271 3' -44.5 NC_005902.1 + 74841 0.66 0.999999
Target:  5'- uUCCUUaucACAacaaUGUaaaGCGUCAUCAACAa -3'
miRNA:   3'- -GGGAAau-UGUg---ACG---UGUAGUAGUUGU- -5'
28271 3' -44.5 NC_005902.1 + 49982 0.73 0.997592
Target:  5'- aCCCUUUAACucCUaagGCAUCAUCAAUAa -3'
miRNA:   3'- -GGGAAAUUGu-GAcg-UGUAGUAGUUGU- -5'
28271 3' -44.5 NC_005902.1 + 154655 0.71 0.999626
Target:  5'- aCCCUUUAACuuuuaagGCAUUAUCAACAa -3'
miRNA:   3'- -GGGAAAUUGugacg--UGUAGUAGUUGU- -5'
28271 3' -44.5 NC_005902.1 + 67779 0.7 0.99977
Target:  5'- aUCCUUUAACuCUaCACuGUCAUCAAUAa -3'
miRNA:   3'- -GGGAAAUUGuGAcGUG-UAGUAGUUGU- -5'
28271 3' -44.5 NC_005902.1 + 91308 0.66 1
Target:  5'- aCCUUUUAACACUuaaacuauauacGCAC-UCAUUuguACAu -3'
miRNA:   3'- -GGGAAAUUGUGA------------CGUGuAGUAGu--UGU- -5'
28271 3' -44.5 NC_005902.1 + 173729 0.66 1
Target:  5'- aCCCUUUAACuucuuuaUGCACcaauaauacuaacauGUCGUCAGu- -3'
miRNA:   3'- -GGGAAAUUGug-----ACGUG---------------UAGUAGUUgu -5'
28271 3' -44.5 NC_005902.1 + 29027 0.66 0.999999
Target:  5'- uUCUUUGACucuaaauauguuACUGaugaugcauuaGCAUCAUCAGCAa -3'
miRNA:   3'- gGGAAAUUG------------UGACg----------UGUAGUAGUUGU- -5'
28271 3' -44.5 NC_005902.1 + 157917 0.67 0.999997
Target:  5'- aCCCUUUAACuccaUGU--GUCAUCGAUg -3'
miRNA:   3'- -GGGAAAUUGug--ACGugUAGUAGUUGu -5'
28271 3' -44.5 NC_005902.1 + 37318 0.68 0.999988
Target:  5'- aCCCUUUAACuccaUGU-UGUCAUCAAUAa -3'
miRNA:   3'- -GGGAAAUUGug--ACGuGUAGUAGUUGU- -5'
28271 3' -44.5 NC_005902.1 + 54870 0.68 0.999983
Target:  5'- aCCCUUUAACACcuaaGC-UAUUAcUCAACAc -3'
miRNA:   3'- -GGGAAAUUGUGa---CGuGUAGU-AGUUGU- -5'
28271 3' -44.5 NC_005902.1 + 11127 0.69 0.999914
Target:  5'- aCCCUuuaaauccauguugUUGAUGCUuuGCAUCAUCAAUg -3'
miRNA:   3'- -GGGA--------------AAUUGUGAcgUGUAGUAGUUGu -5'
28271 3' -44.5 NC_005902.1 + 177271 0.66 1
Target:  5'- aCUCUcaaAGCAUUGUugAcaacUCAUCAACAg -3'
miRNA:   3'- -GGGAaa-UUGUGACGugU----AGUAGUUGU- -5'
28271 3' -44.5 NC_005902.1 + 170202 0.72 0.999089
Target:  5'- aCCCUUUAACua--CACAUUAUCAAUg -3'
miRNA:   3'- -GGGAAAUUGugacGUGUAGUAGUUGu -5'
28271 3' -44.5 NC_005902.1 + 180325 0.71 0.999408
Target:  5'- aCCUUUUAACACUGUACuagUGUUAAUu -3'
miRNA:   3'- -GGGAAAUUGUGACGUGua-GUAGUUGu -5'
28271 3' -44.5 NC_005902.1 + 127677 0.72 0.999089
Target:  5'- aCCCUUUAACuccauGCGUCAUCAAUAc -3'
miRNA:   3'- -GGGAAAUUGugacgUGUAGUAGUUGU- -5'
28271 3' -44.5 NC_005902.1 + 16113 0.67 0.999998
Target:  5'- aCCCUUUAACcCcaaaCACGUCGUCggUg -3'
miRNA:   3'- -GGGAAAUUGuGac--GUGUAGUAGuuGu -5'
28271 3' -44.5 NC_005902.1 + 102205 0.72 0.998632
Target:  5'- aCCCUUUAACucCUaagAUAUCAUCAACAa -3'
miRNA:   3'- -GGGAAAUUGu-GAcg-UGUAGUAGUUGU- -5'
28271 3' -44.5 NC_005902.1 + 71259 0.68 0.999988
Target:  5'- aCCCUUUAACuCU--ACAUCGUCAcCGa -3'
miRNA:   3'- -GGGAAAUUGuGAcgUGUAGUAGUuGU- -5'
28271 3' -44.5 NC_005902.1 + 85553 0.68 0.999988
Target:  5'- aCCCUUUAAUuccaaaCACAUCAcCAACAa -3'
miRNA:   3'- -GGGAAAUUGugac--GUGUAGUaGUUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.